Last updated on 2025-07-22 09:51:11 CEST.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [79s/114s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.475, system: 0.037, elapsed: 1.953 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.913, system: 0.118, elapsed: 12.238 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.188, system: 0.015, elapsed: 0.293 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.788, system: 0.204, elapsed: 6.508 seconds]
Computing values for grid cells...
... done. [user: 0.164, system: 0.003, elapsed: 0.269 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.074, system: 0.401, elapsed: 22.054 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.462, system: 0.037, elapsed: 2.407 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.047, system: 0.079, elapsed: 14.960 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.187, system: 0.012, elapsed: 0.352 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.723, system: 0.170, elapsed: 6.526 seconds]
Computing values for grid cells...
... done. [user: 0.159, system: 0.003, elapsed: 0.238 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.125, system: 0.321, elapsed: 25.398 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.500, system: 0.035, elapsed: 2.355 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.991, system: 0.063, elapsed: 13.472 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.184, system: 0.011, elapsed: 0.231 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.658, system: 0.188, elapsed: 5.123 seconds]
Computing values for grid cells...
... done. [user: 0.160, system: 0.003, elapsed: 0.221 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.142, system: 0.233, elapsed: 1.069 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.285, system: 0.559, elapsed: 23.437 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.456, system: 0.029, elapsed: 2.191 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.948, system: 0.104, elapsed: 13.193 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.195, system: 0.014, elapsed: 0.329 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.687, system: 0.206, elapsed: 5.762 seconds]
Computing values for grid cells...
... done. [user: 0.161, system: 0.007, elapsed: 0.267 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.120, system: 0.528, elapsed: 14.037 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.215, system: 0.920, elapsed: 36.766 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [78s/120s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.572, system: 0.045, elapsed: 2.592 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.022, system: 0.083, elapsed: 22.988 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.188, system: 0.015, elapsed: 0.524 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.661, system: 0.198, elapsed: 8.980 seconds]
Computing values for grid cells...
... done. [user: 0.162, system: 0.003, elapsed: 0.350 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.144, system: 0.362, elapsed: 36.526 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.486, system: 0.027, elapsed: 2.360 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.078, system: 0.067, elapsed: 12.866 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.181, system: 0.012, elapsed: 0.218 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.591, system: 0.177, elapsed: 4.798 seconds]
Computing values for grid cells...
... done. [user: 0.164, system: 0.003, elapsed: 0.193 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.040, system: 0.311, elapsed: 21.269 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.491, system: 0.030, elapsed: 1.957 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.952, system: 0.062, elapsed: 12.054 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.187, system: 0.010, elapsed: 0.279 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.534, system: 0.153, elapsed: 5.046 seconds]
Computing values for grid cells...
... done. [user: 0.166, system: 0.003, elapsed: 0.250 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.059, system: 0.211, elapsed: 0.993 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.042, system: 0.506, elapsed: 21.538 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.547, system: 0.051, elapsed: 2.544 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.021, system: 0.152, elapsed: 11.723 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.191, system: 0.015, elapsed: 0.290 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.535, system: 0.213, elapsed: 4.961 seconds]
Computing values for grid cells...
... done. [user: 0.160, system: 0.003, elapsed: 0.215 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 9.988, system: 0.436, elapsed: 12.981 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.085, system: 0.914, elapsed: 33.735 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64