Last updated on 2026-03-29 09:52:49 CEST.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 12 |
Current CRAN status: ERROR: 2, OK: 12
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [123s/307s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.667, system: 0.055, elapsed: 2.403 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.688, system: 0.108, elapsed: 13.683 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.221, system: 0.019, elapsed: 0.506 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.698, system: 0.709, elapsed: 27.773 seconds]
Computing values for grid cells...
... done. [user: 0.176, system: 0.004, elapsed: 0.193 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.025, system: 0.919, elapsed: 45.274 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.590, system: 0.043, elapsed: 1.986 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.733, system: 0.109, elapsed: 12.887 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.228, system: 0.016, elapsed: 0.823 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.996, system: 0.813, elapsed: 102.126 seconds]
Computing values for grid cells...
... done. [user: 0.183, system: 0.007, elapsed: 0.231 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.365, system: 1.025, elapsed: 118.778 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.585, system: 0.030, elapsed: 2.407 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.773, system: 0.065, elapsed: 14.128 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.221, system: 0.016, elapsed: 1.037 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.731, system: 0.756, elapsed: 90.388 seconds]
Computing values for grid cells...
... done. [user: 0.175, system: 0.002, elapsed: 0.183 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.278, system: 0.230, elapsed: 1.002 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.463, system: 1.139, elapsed: 110.109 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.549, system: 0.034, elapsed: 1.671 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.156, system: 0.035, elapsed: 9.387 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.515, system: 0.023, elapsed: 0.191 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 12.197, system: 0.852, elapsed: 4.455 seconds]
Computing values for grid cells...
... done. [user: 0.189, system: 0.007, elapsed: 0.188 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 29.282, system: 1.092, elapsed: 10.574 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 53.983, system: 2.077, elapsed: 27.185 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [100s/345s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.616, system: 0.048, elapsed: 2.072 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.665, system: 0.091, elapsed: 13.016 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.222, system: 0.018, elapsed: 1.026 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.738, system: 0.852, elapsed: 123.255 seconds]
Computing values for grid cells...
... done. [user: 0.175, system: 0.003, elapsed: 0.353 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.006, system: 1.030, elapsed: 140.483 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.596, system: 0.033, elapsed: 3.472 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.520, system: 0.056, elapsed: 18.591 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.215, system: 0.017, elapsed: 1.070 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.603, system: 0.809, elapsed: 106.531 seconds]
Computing values for grid cells...
... done. [user: 0.154, system: 0.003, elapsed: 0.160 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.647, system: 0.941, elapsed: 130.857 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.505, system: 0.033, elapsed: 1.662 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.489, system: 0.082, elapsed: 12.533 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.210, system: 0.013, elapsed: 0.265 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 8.196, system: 0.901, elapsed: 6.290 seconds]
Computing values for grid cells...
... done. [user: 0.173, system: 0.006, elapsed: 0.181 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.228, system: 0.312, elapsed: 1.068 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 21.552, system: 1.383, elapsed: 22.685 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.623, system: 0.039, elapsed: 2.017 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.615, system: 0.096, elapsed: 11.432 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.237, system: 0.018, elapsed: 0.226 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.527, system: 0.622, elapsed: 9.747 seconds]
Computing values for grid cells...
... done. [user: 0.161, system: 0.003, elapsed: 0.164 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 11.854, system: 0.665, elapsed: 19.886 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 30.703, system: 1.473, elapsed: 44.271 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64