Last updated on 2025-09-20 16:49:32 CEST.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [82s/124s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.564, system: 0.055, elapsed: 1.993 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.924, system: 0.133, elapsed: 10.742 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.185, system: 0.014, elapsed: 0.258 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.847, system: 0.253, elapsed: 5.721 seconds]
Computing values for grid cells...
... done. [user: 0.168, system: 0.007, elapsed: 0.235 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.225, system: 0.488, elapsed: 19.733 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.580, system: 0.072, elapsed: 2.233 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.199, system: 0.259, elapsed: 14.372 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.191, system: 0.016, elapsed: 0.344 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.788, system: 0.212, elapsed: 9.072 seconds]
Computing values for grid cells...
... done. [user: 0.160, system: 0.005, elapsed: 0.254 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.450, system: 0.593, elapsed: 27.084 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.697, system: 0.069, elapsed: 2.696 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.249, system: 0.274, elapsed: 14.271 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.186, system: 0.017, elapsed: 0.300 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.921, system: 0.307, elapsed: 5.958 seconds]
Computing values for grid cells...
... done. [user: 0.168, system: 0.010, elapsed: 0.264 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.195, system: 0.250, elapsed: 1.206 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.030, system: 0.963, elapsed: 25.645 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.720, system: 0.094, elapsed: 2.509 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.144, system: 0.313, elapsed: 13.053 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.180, system: 0.012, elapsed: 0.400 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.747, system: 0.196, elapsed: 6.907 seconds]
Computing values for grid cells...
... done. [user: 0.161, system: 0.004, elapsed: 0.285 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.209, system: 0.488, elapsed: 18.840 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.793, system: 1.147, elapsed: 43.057 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [80s/111s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.529, system: 0.044, elapsed: 1.899 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.763, system: 0.090, elapsed: 9.418 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.180, system: 0.014, elapsed: 0.202 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.540, system: 0.210, elapsed: 4.618 seconds]
Computing values for grid cells...
... done. [user: 0.170, system: 0.008, elapsed: 0.277 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.717, system: 0.391, elapsed: 17.134 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.696, system: 0.079, elapsed: 2.765 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.227, system: 0.276, elapsed: 14.181 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.185, system: 0.018, elapsed: 0.346 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.840, system: 0.267, elapsed: 6.017 seconds]
Computing values for grid cells...
... done. [user: 0.170, system: 0.010, elapsed: 0.245 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.653, system: 0.686, elapsed: 24.447 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.683, system: 0.072, elapsed: 2.428 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.148, system: 0.276, elapsed: 12.242 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.186, system: 0.015, elapsed: 0.241 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.569, system: 0.239, elapsed: 4.551 seconds]
Computing values for grid cells...
... done. [user: 0.170, system: 0.017, elapsed: 0.216 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.027, system: 0.252, elapsed: 0.841 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.390, system: 0.915, elapsed: 21.369 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.592, system: 0.070, elapsed: 1.993 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.949, system: 0.262, elapsed: 12.025 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.187, system: 0.013, elapsed: 0.442 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.533, system: 0.180, elapsed: 6.207 seconds]
Computing values for grid cells...
... done. [user: 0.163, system: 0.004, elapsed: 0.199 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.024, system: 0.491, elapsed: 17.707 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.060, system: 1.054, elapsed: 39.497 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64