Last updated on 2025-07-23 13:50:05 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| citecorp | 5 | 8 | |
| conditionz | 2 | 11 | |
| cowsay | 13 | ||
| crul | 13 | ||
| elastic | 13 | ||
| fauxpas | 13 | ||
| finch | 3 | 10 | |
| ghql | 13 | ||
| gistr | 13 | ||
| httpcode | 13 | ||
| httping | 2 | 11 | |
| isdparser | 13 | ||
| natserv | 13 | ||
| pangaear | 5 | 8 | |
| randgeo | 5 | 8 | |
| rdryad | 13 | ||
| request | 2 | 11 | |
| ritis | 13 | ||
| rorcid | 13 | ||
| sofa | 13 | ||
| solrium | 13 | ||
| vcr | 5 | 3 | 5 |
Current CRAN status: ERROR: 5, OK: 8
Version: 0.3.0
Check: tests
Result: ERROR
Running ‘test-all.R’ [4s/5s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library("testthat")
> test_check("citecorp")
Loading required package: citecorp
[ FAIL 14 | WARN 0 | SKIP 0 | PASS 14 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-oc_coci.R:12:5'): oc_coci_refs works ───────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 26 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:11:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_refs(doi1) at test-oc_coci.R:12:5
4. │ ├─citecorp:::lst2df_tbl(...)
5. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
6. │ │ └─citecorp:::lst2df(x)
7. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
8. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
9. │ └─base::lapply(...)
10. │ └─citecorp (local) FUN(X[[i]], ...)
11. │ └─citecorp:::oc_coci_stub(...)
12. │ └─citecorp:::oc_GET(...)
13. │ └─cli$get(path, query = args)
14. │ └─private$make_request(rr)
15. │ └─crul:::crul_fetch(opts)
16. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
17. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:33:5'): oc_coci_refs - many dois ─────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 19 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:32:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_refs(c(doi1, doi3)) at test-oc_coci.R:33:5
4. │ ├─citecorp:::lst2df_tbl(...)
5. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
6. │ │ └─citecorp:::lst2df(x)
7. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
8. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
9. │ └─base::lapply(...)
10. │ └─citecorp (local) FUN(X[[i]], ...)
11. │ └─citecorp:::oc_coci_stub(...)
12. │ └─citecorp:::oc_GET(...)
13. │ └─cli$get(path, query = args)
14. │ └─private$make_request(rr)
15. │ └─crul:::crul_fetch(opts)
16. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
17. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:47:5'): oc_coci_cites works ──────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 21 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:46:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_cites(doi1) at test-oc_coci.R:47:5
4. │ ├─citecorp:::lst2df_tbl(...)
5. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
6. │ │ └─citecorp:::lst2df(x)
7. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
8. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
9. │ └─base::lapply(...)
10. │ └─citecorp (local) FUN(X[[i]], ...)
11. │ └─citecorp:::oc_coci_stub(...)
12. │ └─citecorp:::oc_GET(...)
13. │ └─cli$get(path, query = args)
14. │ └─private$make_request(rr)
15. │ └─crul:::crul_fetch(opts)
16. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
17. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:67:5'): oc_coci_cites - many dois ────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 22 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:66:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_cites(c(doi1, doi3)) at test-oc_coci.R:67:5
4. │ ├─citecorp:::lst2df_tbl(...)
5. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
6. │ │ └─citecorp:::lst2df(x)
7. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
8. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
9. │ └─base::lapply(...)
10. │ └─citecorp (local) FUN(X[[i]], ...)
11. │ └─citecorp:::oc_coci_stub(...)
12. │ └─citecorp:::oc_GET(...)
13. │ └─cli$get(path, query = args)
14. │ └─private$make_request(rr)
15. │ └─crul:::crul_fetch(opts)
16. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
17. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:81:5'): oc_coci_meta works ───────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 24 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:80:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_meta(doi1) at test-oc_coci.R:81:5
4. │ └─citecorp:::oc_coci_stub(...)
5. │ └─citecorp:::oc_GET(...)
6. │ └─cli$get(path, query = args)
7. │ └─private$make_request(rr)
8. │ └─crul:::crul_fetch(opts)
9. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
10. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:100:5'): oc_coci_meta - many dois ────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 17 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:99:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_meta(c(doi1, doi3)) at test-oc_coci.R:100:5
4. │ └─citecorp:::oc_coci_stub(...)
5. │ └─citecorp:::oc_GET(...)
6. │ └─cli$get(path, query = args)
7. │ └─private$make_request(rr)
8. │ └─crul:::crul_fetch(opts)
9. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
10. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:114:5'): oc_coci_citation works ──────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 21 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:113:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_citation(oci1) at test-oc_coci.R:114:5
4. │ ├─citecorp:::lst2df_tbl(lapply(oci, oc_coci_citation_one, ...))
5. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
6. │ │ └─citecorp:::lst2df(x)
7. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
8. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
9. │ └─base::lapply(oci, oc_coci_citation_one, ...)
10. │ └─citecorp (local) FUN(X[[i]], ...)
11. │ └─citecorp:::oc_GET(...)
12. │ └─cli$get(path, query = args)
13. │ └─private$make_request(rr)
14. │ └─crul:::crul_fetch(opts)
15. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
16. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:138:5'): oc_coci_citation - many dois ────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 22 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:137:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_citation(c(oci1, oci2)) at test-oc_coci.R:138:5
4. │ ├─citecorp:::lst2df_tbl(lapply(oci, oc_coci_citation_one, ...))
5. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
6. │ │ └─citecorp:::lst2df(x)
7. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
8. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
9. │ └─base::lapply(oci, oc_coci_citation_one, ...)
10. │ └─citecorp (local) FUN(X[[i]], ...)
11. │ └─citecorp:::oc_GET(...)
12. │ └─cli$get(path, query = args)
13. │ └─private$make_request(rr)
14. │ └─crul:::crul_fetch(opts)
15. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
16. └─curl:::raise_libcurl_error(...)
── Failure ('test-oc_coci.R:155:3'): citecorp catches cloudflare errors ────────
`oc_coci_cites(doi1)` threw an error with unexpected class.
Expected class: http_520
Actual class: curl_error_couldnt_connect/curl_error/error/condition
Message: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 21 ms: Could not connect to server
Backtrace:
▆
1. ├─testthat::expect_error(oc_coci_cites(doi1), class = "http_520") at test-oc_coci.R:155:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. ├─citecorp::oc_coci_cites(doi1)
7. │ ├─citecorp:::lst2df_tbl(...)
8. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
9. │ │ └─citecorp:::lst2df(x)
10. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
11. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
12. │ └─base::lapply(...)
13. │ └─citecorp (local) FUN(X[[i]], ...)
14. │ └─citecorp:::oc_coci_stub(...)
15. │ └─citecorp:::oc_GET(...)
16. │ └─cli$get(path, query = args)
17. │ └─private$make_request(rr)
18. │ └─crul:::crul_fetch(opts)
19. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
20. └─curl:::raise_libcurl_error(...)
── Failure ('test-oc_coci.R:160:3'): citecorp catches cloudflare errors ────────
`oc_coci_cites(doi3)` threw an error with unexpected class.
Expected class: http_524
Actual class: curl_error_couldnt_connect/curl_error/error/condition
Message: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 25 ms: Could not connect to server
Backtrace:
▆
1. ├─testthat::expect_error(oc_coci_cites(doi3), class = "http_524") at test-oc_coci.R:160:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. ├─citecorp::oc_coci_cites(doi3)
7. │ ├─citecorp:::lst2df_tbl(...)
8. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
9. │ │ └─citecorp:::lst2df(x)
10. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
11. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
12. │ └─base::lapply(...)
13. │ └─citecorp (local) FUN(X[[i]], ...)
14. │ └─citecorp:::oc_coci_stub(...)
15. │ └─citecorp:::oc_GET(...)
16. │ └─cli$get(path, query = args)
17. │ └─private$make_request(rr)
18. │ └─crul:::crul_fetch(opts)
19. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
20. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_lookup.R:6:5'): oc_doi2ids works ────────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 23 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_lookup.R:5:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_doi2ids("10.1097/igc.0000000000000609") at test-oc_lookup.R:6:5
4. │ └─citecorp:::cp_query(qry, ...)
5. │ └─citecorp:::oc_sparql_GET(...)
6. │ └─cli$get(path, query = qry)
7. │ └─private$make_request(rr)
8. │ └─crul:::crul_fetch(opts)
9. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
10. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_lookup.R:16:5'): oc_doi2ids works ───────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 18 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_lookup.R:15:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_doi2ids("10.1093/biomet/80.3.527") at test-oc_lookup.R:16:5
4. │ └─citecorp:::cp_query(qry, ...)
5. │ └─citecorp:::oc_sparql_GET(...)
6. │ └─cli$get(path, query = qry)
7. │ └─private$make_request(rr)
8. │ └─crul:::crul_fetch(opts)
9. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
10. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_lookup.R:39:5'): oc_pmid2ids works ──────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 22 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_lookup.R:38:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_pmid2ids("26645990") at test-oc_lookup.R:39:5
4. │ └─citecorp:::cp_query(qry, ...)
5. │ └─citecorp:::oc_sparql_GET(...)
6. │ └─cli$get(path, query = qry)
7. │ └─private$make_request(rr)
8. │ └─crul:::crul_fetch(opts)
9. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
10. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_lookup.R:57:5'): oc_pmcid2ids works ─────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 18 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_lookup.R:56:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_pmcid2ids("PMC4679344") at test-oc_lookup.R:57:5
4. │ └─citecorp:::cp_query(qry, ...)
5. │ └─citecorp:::oc_sparql_GET(...)
6. │ └─cli$get(path, query = qry)
7. │ └─private$make_request(rr)
8. │ └─crul:::crul_fetch(opts)
9. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
10. └─curl:::raise_libcurl_error(...)
[ FAIL 14 | WARN 0 | SKIP 0 | PASS 14 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.3.0
Check: tests
Result: ERROR
Running ‘test-all.R’ [2s/4s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library("testthat")
> test_check("citecorp")
Loading required package: citecorp
[ FAIL 14 | WARN 0 | SKIP 0 | PASS 14 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-oc_coci.R:12:5'): oc_coci_refs works ───────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 19 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:11:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_refs(doi1) at test-oc_coci.R:12:5
4. │ ├─citecorp:::lst2df_tbl(...)
5. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
6. │ │ └─citecorp:::lst2df(x)
7. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
8. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
9. │ └─base::lapply(...)
10. │ └─citecorp (local) FUN(X[[i]], ...)
11. │ └─citecorp:::oc_coci_stub(...)
12. │ └─citecorp:::oc_GET(...)
13. │ └─cli$get(path, query = args)
14. │ └─private$make_request(rr)
15. │ └─crul:::crul_fetch(opts)
16. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
17. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:33:5'): oc_coci_refs - many dois ─────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 18 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:32:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_refs(c(doi1, doi3)) at test-oc_coci.R:33:5
4. │ ├─citecorp:::lst2df_tbl(...)
5. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
6. │ │ └─citecorp:::lst2df(x)
7. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
8. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
9. │ └─base::lapply(...)
10. │ └─citecorp (local) FUN(X[[i]], ...)
11. │ └─citecorp:::oc_coci_stub(...)
12. │ └─citecorp:::oc_GET(...)
13. │ └─cli$get(path, query = args)
14. │ └─private$make_request(rr)
15. │ └─crul:::crul_fetch(opts)
16. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
17. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:47:5'): oc_coci_cites works ──────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 15 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:46:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_cites(doi1) at test-oc_coci.R:47:5
4. │ ├─citecorp:::lst2df_tbl(...)
5. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
6. │ │ └─citecorp:::lst2df(x)
7. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
8. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
9. │ └─base::lapply(...)
10. │ └─citecorp (local) FUN(X[[i]], ...)
11. │ └─citecorp:::oc_coci_stub(...)
12. │ └─citecorp:::oc_GET(...)
13. │ └─cli$get(path, query = args)
14. │ └─private$make_request(rr)
15. │ └─crul:::crul_fetch(opts)
16. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
17. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:67:5'): oc_coci_cites - many dois ────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 15 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:66:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_cites(c(doi1, doi3)) at test-oc_coci.R:67:5
4. │ ├─citecorp:::lst2df_tbl(...)
5. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
6. │ │ └─citecorp:::lst2df(x)
7. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
8. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
9. │ └─base::lapply(...)
10. │ └─citecorp (local) FUN(X[[i]], ...)
11. │ └─citecorp:::oc_coci_stub(...)
12. │ └─citecorp:::oc_GET(...)
13. │ └─cli$get(path, query = args)
14. │ └─private$make_request(rr)
15. │ └─crul:::crul_fetch(opts)
16. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
17. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:81:5'): oc_coci_meta works ───────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 16 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:80:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_meta(doi1) at test-oc_coci.R:81:5
4. │ └─citecorp:::oc_coci_stub(...)
5. │ └─citecorp:::oc_GET(...)
6. │ └─cli$get(path, query = args)
7. │ └─private$make_request(rr)
8. │ └─crul:::crul_fetch(opts)
9. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
10. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:100:5'): oc_coci_meta - many dois ────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 25 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:99:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_meta(c(doi1, doi3)) at test-oc_coci.R:100:5
4. │ └─citecorp:::oc_coci_stub(...)
5. │ └─citecorp:::oc_GET(...)
6. │ └─cli$get(path, query = args)
7. │ └─private$make_request(rr)
8. │ └─crul:::crul_fetch(opts)
9. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
10. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:114:5'): oc_coci_citation works ──────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 21 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:113:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_citation(oci1) at test-oc_coci.R:114:5
4. │ ├─citecorp:::lst2df_tbl(lapply(oci, oc_coci_citation_one, ...))
5. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
6. │ │ └─citecorp:::lst2df(x)
7. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
8. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
9. │ └─base::lapply(oci, oc_coci_citation_one, ...)
10. │ └─citecorp (local) FUN(X[[i]], ...)
11. │ └─citecorp:::oc_GET(...)
12. │ └─cli$get(path, query = args)
13. │ └─private$make_request(rr)
14. │ └─crul:::crul_fetch(opts)
15. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
16. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:138:5'): oc_coci_citation - many dois ────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 18 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:137:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_citation(c(oci1, oci2)) at test-oc_coci.R:138:5
4. │ ├─citecorp:::lst2df_tbl(lapply(oci, oc_coci_citation_one, ...))
5. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
6. │ │ └─citecorp:::lst2df(x)
7. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
8. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
9. │ └─base::lapply(oci, oc_coci_citation_one, ...)
10. │ └─citecorp (local) FUN(X[[i]], ...)
11. │ └─citecorp:::oc_GET(...)
12. │ └─cli$get(path, query = args)
13. │ └─private$make_request(rr)
14. │ └─crul:::crul_fetch(opts)
15. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
16. └─curl:::raise_libcurl_error(...)
── Failure ('test-oc_coci.R:155:3'): citecorp catches cloudflare errors ────────
`oc_coci_cites(doi1)` threw an error with unexpected class.
Expected class: http_520
Actual class: curl_error_couldnt_connect/curl_error/error/condition
Message: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 23 ms: Could not connect to server
Backtrace:
▆
1. ├─testthat::expect_error(oc_coci_cites(doi1), class = "http_520") at test-oc_coci.R:155:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. ├─citecorp::oc_coci_cites(doi1)
7. │ ├─citecorp:::lst2df_tbl(...)
8. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
9. │ │ └─citecorp:::lst2df(x)
10. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
11. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
12. │ └─base::lapply(...)
13. │ └─citecorp (local) FUN(X[[i]], ...)
14. │ └─citecorp:::oc_coci_stub(...)
15. │ └─citecorp:::oc_GET(...)
16. │ └─cli$get(path, query = args)
17. │ └─private$make_request(rr)
18. │ └─crul:::crul_fetch(opts)
19. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
20. └─curl:::raise_libcurl_error(...)
── Failure ('test-oc_coci.R:160:3'): citecorp catches cloudflare errors ────────
`oc_coci_cites(doi3)` threw an error with unexpected class.
Expected class: http_524
Actual class: curl_error_couldnt_connect/curl_error/error/condition
Message: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 26 ms: Could not connect to server
Backtrace:
▆
1. ├─testthat::expect_error(oc_coci_cites(doi3), class = "http_524") at test-oc_coci.R:160:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. ├─citecorp::oc_coci_cites(doi3)
7. │ ├─citecorp:::lst2df_tbl(...)
8. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
9. │ │ └─citecorp:::lst2df(x)
10. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
11. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
12. │ └─base::lapply(...)
13. │ └─citecorp (local) FUN(X[[i]], ...)
14. │ └─citecorp:::oc_coci_stub(...)
15. │ └─citecorp:::oc_GET(...)
16. │ └─cli$get(path, query = args)
17. │ └─private$make_request(rr)
18. │ └─crul:::crul_fetch(opts)
19. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
20. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_lookup.R:6:5'): oc_doi2ids works ────────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 18 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_lookup.R:5:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_doi2ids("10.1097/igc.0000000000000609") at test-oc_lookup.R:6:5
4. │ └─citecorp:::cp_query(qry, ...)
5. │ └─citecorp:::oc_sparql_GET(...)
6. │ └─cli$get(path, query = qry)
7. │ └─private$make_request(rr)
8. │ └─crul:::crul_fetch(opts)
9. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
10. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_lookup.R:16:5'): oc_doi2ids works ───────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 18 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_lookup.R:15:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_doi2ids("10.1093/biomet/80.3.527") at test-oc_lookup.R:16:5
4. │ └─citecorp:::cp_query(qry, ...)
5. │ └─citecorp:::oc_sparql_GET(...)
6. │ └─cli$get(path, query = qry)
7. │ └─private$make_request(rr)
8. │ └─crul:::crul_fetch(opts)
9. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
10. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_lookup.R:39:5'): oc_pmid2ids works ──────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 18 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_lookup.R:38:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_pmid2ids("26645990") at test-oc_lookup.R:39:5
4. │ └─citecorp:::cp_query(qry, ...)
5. │ └─citecorp:::oc_sparql_GET(...)
6. │ └─cli$get(path, query = qry)
7. │ └─private$make_request(rr)
8. │ └─crul:::crul_fetch(opts)
9. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
10. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_lookup.R:57:5'): oc_pmcid2ids works ─────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 21 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_lookup.R:56:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_pmcid2ids("PMC4679344") at test-oc_lookup.R:57:5
4. │ └─citecorp:::cp_query(qry, ...)
5. │ └─citecorp:::oc_sparql_GET(...)
6. │ └─cli$get(path, query = qry)
7. │ └─private$make_request(rr)
8. │ └─crul:::crul_fetch(opts)
9. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
10. └─curl:::raise_libcurl_error(...)
[ FAIL 14 | WARN 0 | SKIP 0 | PASS 14 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.3.0
Check: tests
Result: ERROR
Running ‘test-all.R’ [6s/12s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library("testthat")
> test_check("citecorp")
Loading required package: citecorp
[ FAIL 14 | WARN 0 | SKIP 0 | PASS 14 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-oc_coci.R:12:5'): oc_coci_refs works ───────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 35 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:11:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_refs(doi1) at test-oc_coci.R:12:5
4. │ ├─citecorp:::lst2df_tbl(...)
5. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
6. │ │ └─citecorp:::lst2df(x)
7. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
8. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
9. │ └─base::lapply(...)
10. │ └─citecorp (local) FUN(X[[i]], ...)
11. │ └─citecorp:::oc_coci_stub(...)
12. │ └─citecorp:::oc_GET(...)
13. │ └─cli$get(path, query = args)
14. │ └─private$make_request(rr)
15. │ └─crul:::crul_fetch(opts)
16. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
17. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:33:5'): oc_coci_refs - many dois ─────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 40 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:32:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_refs(c(doi1, doi3)) at test-oc_coci.R:33:5
4. │ ├─citecorp:::lst2df_tbl(...)
5. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
6. │ │ └─citecorp:::lst2df(x)
7. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
8. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
9. │ └─base::lapply(...)
10. │ └─citecorp (local) FUN(X[[i]], ...)
11. │ └─citecorp:::oc_coci_stub(...)
12. │ └─citecorp:::oc_GET(...)
13. │ └─cli$get(path, query = args)
14. │ └─private$make_request(rr)
15. │ └─crul:::crul_fetch(opts)
16. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
17. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:47:5'): oc_coci_cites works ──────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 32 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:46:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_cites(doi1) at test-oc_coci.R:47:5
4. │ ├─citecorp:::lst2df_tbl(...)
5. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
6. │ │ └─citecorp:::lst2df(x)
7. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
8. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
9. │ └─base::lapply(...)
10. │ └─citecorp (local) FUN(X[[i]], ...)
11. │ └─citecorp:::oc_coci_stub(...)
12. │ └─citecorp:::oc_GET(...)
13. │ └─cli$get(path, query = args)
14. │ └─private$make_request(rr)
15. │ └─crul:::crul_fetch(opts)
16. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
17. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:67:5'): oc_coci_cites - many dois ────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 31 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:66:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_cites(c(doi1, doi3)) at test-oc_coci.R:67:5
4. │ ├─citecorp:::lst2df_tbl(...)
5. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
6. │ │ └─citecorp:::lst2df(x)
7. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
8. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
9. │ └─base::lapply(...)
10. │ └─citecorp (local) FUN(X[[i]], ...)
11. │ └─citecorp:::oc_coci_stub(...)
12. │ └─citecorp:::oc_GET(...)
13. │ └─cli$get(path, query = args)
14. │ └─private$make_request(rr)
15. │ └─crul:::crul_fetch(opts)
16. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
17. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:81:5'): oc_coci_meta works ───────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 28 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:80:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_meta(doi1) at test-oc_coci.R:81:5
4. │ └─citecorp:::oc_coci_stub(...)
5. │ └─citecorp:::oc_GET(...)
6. │ └─cli$get(path, query = args)
7. │ └─private$make_request(rr)
8. │ └─crul:::crul_fetch(opts)
9. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
10. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:100:5'): oc_coci_meta - many dois ────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 32 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:99:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_meta(c(doi1, doi3)) at test-oc_coci.R:100:5
4. │ └─citecorp:::oc_coci_stub(...)
5. │ └─citecorp:::oc_GET(...)
6. │ └─cli$get(path, query = args)
7. │ └─private$make_request(rr)
8. │ └─crul:::crul_fetch(opts)
9. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
10. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:114:5'): oc_coci_citation works ──────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 31 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:113:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_citation(oci1) at test-oc_coci.R:114:5
4. │ ├─citecorp:::lst2df_tbl(lapply(oci, oc_coci_citation_one, ...))
5. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
6. │ │ └─citecorp:::lst2df(x)
7. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
8. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
9. │ └─base::lapply(oci, oc_coci_citation_one, ...)
10. │ └─citecorp (local) FUN(X[[i]], ...)
11. │ └─citecorp:::oc_GET(...)
12. │ └─cli$get(path, query = args)
13. │ └─private$make_request(rr)
14. │ └─crul:::crul_fetch(opts)
15. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
16. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:138:5'): oc_coci_citation - many dois ────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 35 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:137:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_citation(c(oci1, oci2)) at test-oc_coci.R:138:5
4. │ ├─citecorp:::lst2df_tbl(lapply(oci, oc_coci_citation_one, ...))
5. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
6. │ │ └─citecorp:::lst2df(x)
7. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
8. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
9. │ └─base::lapply(oci, oc_coci_citation_one, ...)
10. │ └─citecorp (local) FUN(X[[i]], ...)
11. │ └─citecorp:::oc_GET(...)
12. │ └─cli$get(path, query = args)
13. │ └─private$make_request(rr)
14. │ └─crul:::crul_fetch(opts)
15. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
16. └─curl:::raise_libcurl_error(...)
── Failure ('test-oc_coci.R:155:3'): citecorp catches cloudflare errors ────────
`oc_coci_cites(doi1)` threw an error with unexpected class.
Expected class: http_520
Actual class: curl_error_couldnt_connect/curl_error/error/condition
Message: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 32 ms: Could not connect to server
Backtrace:
▆
1. ├─testthat::expect_error(oc_coci_cites(doi1), class = "http_520") at test-oc_coci.R:155:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. ├─citecorp::oc_coci_cites(doi1)
7. │ ├─citecorp:::lst2df_tbl(...)
8. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
9. │ │ └─citecorp:::lst2df(x)
10. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
11. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
12. │ └─base::lapply(...)
13. │ └─citecorp (local) FUN(X[[i]], ...)
14. │ └─citecorp:::oc_coci_stub(...)
15. │ └─citecorp:::oc_GET(...)
16. │ └─cli$get(path, query = args)
17. │ └─private$make_request(rr)
18. │ └─crul:::crul_fetch(opts)
19. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
20. └─curl:::raise_libcurl_error(...)
── Failure ('test-oc_coci.R:160:3'): citecorp catches cloudflare errors ────────
`oc_coci_cites(doi3)` threw an error with unexpected class.
Expected class: http_524
Actual class: curl_error_couldnt_connect/curl_error/error/condition
Message: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 32 ms: Could not connect to server
Backtrace:
▆
1. ├─testthat::expect_error(oc_coci_cites(doi3), class = "http_524") at test-oc_coci.R:160:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. ├─citecorp::oc_coci_cites(doi3)
7. │ ├─citecorp:::lst2df_tbl(...)
8. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
9. │ │ └─citecorp:::lst2df(x)
10. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
11. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
12. │ └─base::lapply(...)
13. │ └─citecorp (local) FUN(X[[i]], ...)
14. │ └─citecorp:::oc_coci_stub(...)
15. │ └─citecorp:::oc_GET(...)
16. │ └─cli$get(path, query = args)
17. │ └─private$make_request(rr)
18. │ └─crul:::crul_fetch(opts)
19. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
20. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_lookup.R:6:5'): oc_doi2ids works ────────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 29 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_lookup.R:5:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_doi2ids("10.1097/igc.0000000000000609") at test-oc_lookup.R:6:5
4. │ └─citecorp:::cp_query(qry, ...)
5. │ └─citecorp:::oc_sparql_GET(...)
6. │ └─cli$get(path, query = qry)
7. │ └─private$make_request(rr)
8. │ └─crul:::crul_fetch(opts)
9. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
10. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_lookup.R:16:5'): oc_doi2ids works ───────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 34 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_lookup.R:15:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_doi2ids("10.1093/biomet/80.3.527") at test-oc_lookup.R:16:5
4. │ └─citecorp:::cp_query(qry, ...)
5. │ └─citecorp:::oc_sparql_GET(...)
6. │ └─cli$get(path, query = qry)
7. │ └─private$make_request(rr)
8. │ └─crul:::crul_fetch(opts)
9. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
10. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_lookup.R:39:5'): oc_pmid2ids works ──────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 31 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_lookup.R:38:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_pmid2ids("26645990") at test-oc_lookup.R:39:5
4. │ └─citecorp:::cp_query(qry, ...)
5. │ └─citecorp:::oc_sparql_GET(...)
6. │ └─cli$get(path, query = qry)
7. │ └─private$make_request(rr)
8. │ └─crul:::crul_fetch(opts)
9. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
10. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_lookup.R:57:5'): oc_pmcid2ids works ─────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 32 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_lookup.R:56:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_pmcid2ids("PMC4679344") at test-oc_lookup.R:57:5
4. │ └─citecorp:::cp_query(qry, ...)
5. │ └─citecorp:::oc_sparql_GET(...)
6. │ └─cli$get(path, query = qry)
7. │ └─private$make_request(rr)
8. │ └─crul:::crul_fetch(opts)
9. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
10. └─curl:::raise_libcurl_error(...)
[ FAIL 14 | WARN 0 | SKIP 0 | PASS 14 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.3.0
Check: tests
Result: ERROR
Running ‘test-all.R’
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library("testthat")
> test_check("citecorp")
Loading required package: citecorp
[ FAIL 14 | WARN 0 | SKIP 0 | PASS 14 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-oc_coci.R:12:5'): oc_coci_refs works ───────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 40 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:11:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_refs(doi1) at test-oc_coci.R:12:5
4. │ ├─citecorp:::lst2df_tbl(...)
5. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
6. │ │ └─citecorp:::lst2df(x)
7. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
8. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
9. │ └─base::lapply(...)
10. │ └─citecorp (local) FUN(X[[i]], ...)
11. │ └─citecorp:::oc_coci_stub(...)
12. │ └─citecorp:::oc_GET(...)
13. │ └─cli$get(path, query = args)
14. │ └─private$make_request(rr)
15. │ └─crul:::crul_fetch(opts)
16. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
17. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:33:5'): oc_coci_refs - many dois ─────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 31 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:32:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_refs(c(doi1, doi3)) at test-oc_coci.R:33:5
4. │ ├─citecorp:::lst2df_tbl(...)
5. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
6. │ │ └─citecorp:::lst2df(x)
7. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
8. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
9. │ └─base::lapply(...)
10. │ └─citecorp (local) FUN(X[[i]], ...)
11. │ └─citecorp:::oc_coci_stub(...)
12. │ └─citecorp:::oc_GET(...)
13. │ └─cli$get(path, query = args)
14. │ └─private$make_request(rr)
15. │ └─crul:::crul_fetch(opts)
16. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
17. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:47:5'): oc_coci_cites works ──────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 28 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:46:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_cites(doi1) at test-oc_coci.R:47:5
4. │ ├─citecorp:::lst2df_tbl(...)
5. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
6. │ │ └─citecorp:::lst2df(x)
7. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
8. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
9. │ └─base::lapply(...)
10. │ └─citecorp (local) FUN(X[[i]], ...)
11. │ └─citecorp:::oc_coci_stub(...)
12. │ └─citecorp:::oc_GET(...)
13. │ └─cli$get(path, query = args)
14. │ └─private$make_request(rr)
15. │ └─crul:::crul_fetch(opts)
16. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
17. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:67:5'): oc_coci_cites - many dois ────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 35 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:66:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_cites(c(doi1, doi3)) at test-oc_coci.R:67:5
4. │ ├─citecorp:::lst2df_tbl(...)
5. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
6. │ │ └─citecorp:::lst2df(x)
7. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
8. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
9. │ └─base::lapply(...)
10. │ └─citecorp (local) FUN(X[[i]], ...)
11. │ └─citecorp:::oc_coci_stub(...)
12. │ └─citecorp:::oc_GET(...)
13. │ └─cli$get(path, query = args)
14. │ └─private$make_request(rr)
15. │ └─crul:::crul_fetch(opts)
16. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
17. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:81:5'): oc_coci_meta works ───────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 32 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:80:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_meta(doi1) at test-oc_coci.R:81:5
4. │ └─citecorp:::oc_coci_stub(...)
5. │ └─citecorp:::oc_GET(...)
6. │ └─cli$get(path, query = args)
7. │ └─private$make_request(rr)
8. │ └─crul:::crul_fetch(opts)
9. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
10. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:100:5'): oc_coci_meta - many dois ────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 34 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:99:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_meta(c(doi1, doi3)) at test-oc_coci.R:100:5
4. │ └─citecorp:::oc_coci_stub(...)
5. │ └─citecorp:::oc_GET(...)
6. │ └─cli$get(path, query = args)
7. │ └─private$make_request(rr)
8. │ └─crul:::crul_fetch(opts)
9. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
10. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:114:5'): oc_coci_citation works ──────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 29 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:113:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_citation(oci1) at test-oc_coci.R:114:5
4. │ ├─citecorp:::lst2df_tbl(lapply(oci, oc_coci_citation_one, ...))
5. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
6. │ │ └─citecorp:::lst2df(x)
7. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
8. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
9. │ └─base::lapply(oci, oc_coci_citation_one, ...)
10. │ └─citecorp (local) FUN(X[[i]], ...)
11. │ └─citecorp:::oc_GET(...)
12. │ └─cli$get(path, query = args)
13. │ └─private$make_request(rr)
14. │ └─crul:::crul_fetch(opts)
15. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
16. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:138:5'): oc_coci_citation - many dois ────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 31 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:137:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_citation(c(oci1, oci2)) at test-oc_coci.R:138:5
4. │ ├─citecorp:::lst2df_tbl(lapply(oci, oc_coci_citation_one, ...))
5. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
6. │ │ └─citecorp:::lst2df(x)
7. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
8. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
9. │ └─base::lapply(oci, oc_coci_citation_one, ...)
10. │ └─citecorp (local) FUN(X[[i]], ...)
11. │ └─citecorp:::oc_GET(...)
12. │ └─cli$get(path, query = args)
13. │ └─private$make_request(rr)
14. │ └─crul:::crul_fetch(opts)
15. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
16. └─curl:::raise_libcurl_error(...)
── Failure ('test-oc_coci.R:155:3'): citecorp catches cloudflare errors ────────
`oc_coci_cites(doi1)` threw an error with unexpected class.
Expected class: http_520
Actual class: curl_error_couldnt_connect/curl_error/error/condition
Message: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 32 ms: Could not connect to server
Backtrace:
▆
1. ├─testthat::expect_error(oc_coci_cites(doi1), class = "http_520") at test-oc_coci.R:155:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. ├─citecorp::oc_coci_cites(doi1)
7. │ ├─citecorp:::lst2df_tbl(...)
8. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
9. │ │ └─citecorp:::lst2df(x)
10. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
11. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
12. │ └─base::lapply(...)
13. │ └─citecorp (local) FUN(X[[i]], ...)
14. │ └─citecorp:::oc_coci_stub(...)
15. │ └─citecorp:::oc_GET(...)
16. │ └─cli$get(path, query = args)
17. │ └─private$make_request(rr)
18. │ └─crul:::crul_fetch(opts)
19. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
20. └─curl:::raise_libcurl_error(...)
── Failure ('test-oc_coci.R:160:3'): citecorp catches cloudflare errors ────────
`oc_coci_cites(doi3)` threw an error with unexpected class.
Expected class: http_524
Actual class: curl_error_couldnt_connect/curl_error/error/condition
Message: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 29 ms: Could not connect to server
Backtrace:
▆
1. ├─testthat::expect_error(oc_coci_cites(doi3), class = "http_524") at test-oc_coci.R:160:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. ├─citecorp::oc_coci_cites(doi3)
7. │ ├─citecorp:::lst2df_tbl(...)
8. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
9. │ │ └─citecorp:::lst2df(x)
10. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
11. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
12. │ └─base::lapply(...)
13. │ └─citecorp (local) FUN(X[[i]], ...)
14. │ └─citecorp:::oc_coci_stub(...)
15. │ └─citecorp:::oc_GET(...)
16. │ └─cli$get(path, query = args)
17. │ └─private$make_request(rr)
18. │ └─crul:::crul_fetch(opts)
19. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
20. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_lookup.R:6:5'): oc_doi2ids works ────────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 31 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_lookup.R:5:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_doi2ids("10.1097/igc.0000000000000609") at test-oc_lookup.R:6:5
4. │ └─citecorp:::cp_query(qry, ...)
5. │ └─citecorp:::oc_sparql_GET(...)
6. │ └─cli$get(path, query = qry)
7. │ └─private$make_request(rr)
8. │ └─crul:::crul_fetch(opts)
9. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
10. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_lookup.R:16:5'): oc_doi2ids works ───────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 31 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_lookup.R:15:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_doi2ids("10.1093/biomet/80.3.527") at test-oc_lookup.R:16:5
4. │ └─citecorp:::cp_query(qry, ...)
5. │ └─citecorp:::oc_sparql_GET(...)
6. │ └─cli$get(path, query = qry)
7. │ └─private$make_request(rr)
8. │ └─crul:::crul_fetch(opts)
9. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
10. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_lookup.R:39:5'): oc_pmid2ids works ──────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 31 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_lookup.R:38:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_pmid2ids("26645990") at test-oc_lookup.R:39:5
4. │ └─citecorp:::cp_query(qry, ...)
5. │ └─citecorp:::oc_sparql_GET(...)
6. │ └─cli$get(path, query = qry)
7. │ └─private$make_request(rr)
8. │ └─crul:::crul_fetch(opts)
9. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
10. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_lookup.R:57:5'): oc_pmcid2ids works ─────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 35 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_lookup.R:56:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_pmcid2ids("PMC4679344") at test-oc_lookup.R:57:5
4. │ └─citecorp:::cp_query(qry, ...)
5. │ └─citecorp:::oc_sparql_GET(...)
6. │ └─cli$get(path, query = qry)
7. │ └─private$make_request(rr)
8. │ └─crul:::crul_fetch(opts)
9. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
10. └─curl:::raise_libcurl_error(...)
[ FAIL 14 | WARN 0 | SKIP 0 | PASS 14 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.3.0
Check: tests
Result: ERROR
Running 'test-all.R' [37s]
Running the tests in 'tests/test-all.R' failed.
Complete output:
> library("testthat")
> test_check("citecorp")
Loading required package: citecorp
[ FAIL 14 | WARN 0 | SKIP 0 | PASS 14 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-oc_coci.R:12:5'): oc_coci_refs works ───────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 2712 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:11:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_refs(doi1) at test-oc_coci.R:12:5
4. │ ├─citecorp:::lst2df_tbl(...)
5. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
6. │ │ └─citecorp:::lst2df(x)
7. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
8. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
9. │ └─base::lapply(...)
10. │ └─citecorp (local) FUN(X[[i]], ...)
11. │ └─citecorp:::oc_coci_stub(...)
12. │ └─citecorp:::oc_GET(...)
13. │ └─cli$get(path, query = args)
14. │ └─private$make_request(rr)
15. │ └─crul:::crul_fetch(opts)
16. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
17. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:33:5'): oc_coci_refs - many dois ─────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 2157 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:32:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_refs(c(doi1, doi3)) at test-oc_coci.R:33:5
4. │ ├─citecorp:::lst2df_tbl(...)
5. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
6. │ │ └─citecorp:::lst2df(x)
7. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
8. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
9. │ └─base::lapply(...)
10. │ └─citecorp (local) FUN(X[[i]], ...)
11. │ └─citecorp:::oc_coci_stub(...)
12. │ └─citecorp:::oc_GET(...)
13. │ └─cli$get(path, query = args)
14. │ └─private$make_request(rr)
15. │ └─crul:::crul_fetch(opts)
16. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
17. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:47:5'): oc_coci_cites works ──────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 2217 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:46:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_cites(doi1) at test-oc_coci.R:47:5
4. │ ├─citecorp:::lst2df_tbl(...)
5. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
6. │ │ └─citecorp:::lst2df(x)
7. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
8. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
9. │ └─base::lapply(...)
10. │ └─citecorp (local) FUN(X[[i]], ...)
11. │ └─citecorp:::oc_coci_stub(...)
12. │ └─citecorp:::oc_GET(...)
13. │ └─cli$get(path, query = args)
14. │ └─private$make_request(rr)
15. │ └─crul:::crul_fetch(opts)
16. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
17. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:67:5'): oc_coci_cites - many dois ────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 2678 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:66:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_cites(c(doi1, doi3)) at test-oc_coci.R:67:5
4. │ ├─citecorp:::lst2df_tbl(...)
5. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
6. │ │ └─citecorp:::lst2df(x)
7. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
8. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
9. │ └─base::lapply(...)
10. │ └─citecorp (local) FUN(X[[i]], ...)
11. │ └─citecorp:::oc_coci_stub(...)
12. │ └─citecorp:::oc_GET(...)
13. │ └─cli$get(path, query = args)
14. │ └─private$make_request(rr)
15. │ └─crul:::crul_fetch(opts)
16. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
17. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:81:5'): oc_coci_meta works ───────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 2622 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:80:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_meta(doi1) at test-oc_coci.R:81:5
4. │ └─citecorp:::oc_coci_stub(...)
5. │ └─citecorp:::oc_GET(...)
6. │ └─cli$get(path, query = args)
7. │ └─private$make_request(rr)
8. │ └─crul:::crul_fetch(opts)
9. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
10. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:100:5'): oc_coci_meta - many dois ────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 2157 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:99:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_meta(c(doi1, doi3)) at test-oc_coci.R:100:5
4. │ └─citecorp:::oc_coci_stub(...)
5. │ └─citecorp:::oc_GET(...)
6. │ └─cli$get(path, query = args)
7. │ └─private$make_request(rr)
8. │ └─crul:::crul_fetch(opts)
9. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
10. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:114:5'): oc_coci_citation works ──────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 2743 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:113:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_citation(oci1) at test-oc_coci.R:114:5
4. │ ├─citecorp:::lst2df_tbl(lapply(oci, oc_coci_citation_one, ...))
5. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
6. │ │ └─citecorp:::lst2df(x)
7. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
8. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
9. │ └─base::lapply(oci, oc_coci_citation_one, ...)
10. │ └─citecorp (local) FUN(X[[i]], ...)
11. │ └─citecorp:::oc_GET(...)
12. │ └─cli$get(path, query = args)
13. │ └─private$make_request(rr)
14. │ └─crul:::crul_fetch(opts)
15. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
16. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_coci.R:138:5'): oc_coci_citation - many dois ────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 2201 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_coci.R:137:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_coci_citation(c(oci1, oci2)) at test-oc_coci.R:138:5
4. │ ├─citecorp:::lst2df_tbl(lapply(oci, oc_coci_citation_one, ...))
5. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
6. │ │ └─citecorp:::lst2df(x)
7. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
8. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
9. │ └─base::lapply(oci, oc_coci_citation_one, ...)
10. │ └─citecorp (local) FUN(X[[i]], ...)
11. │ └─citecorp:::oc_GET(...)
12. │ └─cli$get(path, query = args)
13. │ └─private$make_request(rr)
14. │ └─crul:::crul_fetch(opts)
15. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
16. └─curl:::raise_libcurl_error(...)
── Failure ('test-oc_coci.R:155:3'): citecorp catches cloudflare errors ────────
`oc_coci_cites(doi1)` threw an error with unexpected class.
Expected class: http_520
Actual class: curl_error_couldnt_connect/curl_error/error/condition
Message: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 2700 ms: Could not connect to server
Backtrace:
▆
1. ├─testthat::expect_error(oc_coci_cites(doi1), class = "http_520") at test-oc_coci.R:155:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. ├─citecorp::oc_coci_cites(doi1)
7. │ ├─citecorp:::lst2df_tbl(...)
8. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
9. │ │ └─citecorp:::lst2df(x)
10. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
11. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
12. │ └─base::lapply(...)
13. │ └─citecorp (local) FUN(X[[i]], ...)
14. │ └─citecorp:::oc_coci_stub(...)
15. │ └─citecorp:::oc_GET(...)
16. │ └─cli$get(path, query = args)
17. │ └─private$make_request(rr)
18. │ └─crul:::crul_fetch(opts)
19. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
20. └─curl:::raise_libcurl_error(...)
── Failure ('test-oc_coci.R:160:3'): citecorp catches cloudflare errors ────────
`oc_coci_cites(doi3)` threw an error with unexpected class.
Expected class: http_524
Actual class: curl_error_couldnt_connect/curl_error/error/condition
Message: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 2173 ms: Could not connect to server
Backtrace:
▆
1. ├─testthat::expect_error(oc_coci_cites(doi3), class = "http_524") at test-oc_coci.R:160:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. ├─citecorp::oc_coci_cites(doi3)
7. │ ├─citecorp:::lst2df_tbl(...)
8. │ │ ├─base::structure(lst2df(x), class = c("tbl_df", "tbl", "data.frame"))
9. │ │ └─citecorp:::lst2df(x)
10. │ │ ├─data.table::setDF(data.table::rbindlist(x, fill = TRUE, use.names = TRUE))
11. │ │ └─data.table::rbindlist(x, fill = TRUE, use.names = TRUE)
12. │ └─base::lapply(...)
13. │ └─citecorp (local) FUN(X[[i]], ...)
14. │ └─citecorp:::oc_coci_stub(...)
15. │ └─citecorp:::oc_GET(...)
16. │ └─cli$get(path, query = args)
17. │ └─private$make_request(rr)
18. │ └─crul:::crul_fetch(opts)
19. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
20. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_lookup.R:6:5'): oc_doi2ids works ────────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 2210 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_lookup.R:5:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_doi2ids("10.1097/igc.0000000000000609") at test-oc_lookup.R:6:5
4. │ └─citecorp:::cp_query(qry, ...)
5. │ └─citecorp:::oc_sparql_GET(...)
6. │ └─cli$get(path, query = qry)
7. │ └─private$make_request(rr)
8. │ └─crul:::crul_fetch(opts)
9. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
10. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_lookup.R:16:5'): oc_doi2ids works ───────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 2645 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_lookup.R:15:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_doi2ids("10.1093/biomet/80.3.527") at test-oc_lookup.R:16:5
4. │ └─citecorp:::cp_query(qry, ...)
5. │ └─citecorp:::oc_sparql_GET(...)
6. │ └─cli$get(path, query = qry)
7. │ └─private$make_request(rr)
8. │ └─crul:::crul_fetch(opts)
9. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
10. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_lookup.R:39:5'): oc_pmid2ids works ──────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 2156 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_lookup.R:38:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_pmid2ids("26645990") at test-oc_lookup.R:39:5
4. │ └─citecorp:::cp_query(qry, ...)
5. │ └─citecorp:::oc_sparql_GET(...)
6. │ └─cli$get(path, query = qry)
7. │ └─private$make_request(rr)
8. │ └─crul:::crul_fetch(opts)
9. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
10. └─curl:::raise_libcurl_error(...)
── Error ('test-oc_lookup.R:57:5'): oc_pmcid2ids works ─────────────────────────
<curl_error_couldnt_connect/curl_error/error/condition>
Error in `curl::curl_fetch_memory(x$url$url, handle = x$url$handle)`: Could not connect to server [opencitations.net]:
Failed to connect to opencitations.net port 80 after 2607 ms: Could not connect to server
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oc_lookup.R:56:3
2. │ └─cassette$call_block(...)
3. ├─citecorp::oc_pmcid2ids("PMC4679344") at test-oc_lookup.R:57:5
4. │ └─citecorp:::cp_query(qry, ...)
5. │ └─citecorp:::oc_sparql_GET(...)
6. │ └─cli$get(path, query = qry)
7. │ └─private$make_request(rr)
8. │ └─crul:::crul_fetch(opts)
9. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
10. └─curl:::raise_libcurl_error(...)
[ FAIL 14 | WARN 0 | SKIP 0 | PASS 14 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Current CRAN status: NOTE: 2, OK: 11
Version: 0.1.0
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Scott Chamberlain <myrmecocystus@gmail.com>’
Found the following (possibly) invalid file URI:
URI: CODE_OF_CONDUCT.md
From: README.md
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 13
Version: 1.2.0
Check: Rd files
Result: NOTE
checkRd: (-1) docs_delete_by_query.Rd:47: Lost braces; missing escapes or markup?
47 | as a document at .tasks/task/${taskId}. This is yours to keep or remove
| ^
checkRd: (-1) docs_update_by_query.Rd:48: Lost braces; missing escapes or markup?
48 | as a document at .tasks/task/${taskId}. This is yours to keep or remove
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: NOTE: 13
Version: 0.5.2
Check: Rd files
Result: NOTE
checkRd: (-1) Error-Classes.Rd:107-119: Lost braces
107 | \item \code{do_verbose(response, template)} {
| ^
checkRd: (-1) Error.Rd:33-45: Lost braces
33 | \item \code{do(response, mssg)} {
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: NOTE: 3, OK: 10
Version: 0.4.0
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 2, OK: 11
Version: 0.2.0
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Scott Chamberlain <myrmecocystus@gmail.com>’
Found the following (possibly) invalid file URI:
URI: CODE_OF_CONDUCT.md
From: README.md
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: ERROR: 5, OK: 8
Version: 1.1.0
Check: tests
Result: ERROR
Running ‘test-all.R’ [6s/10s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library("testthat")
> test_check("pangaear")
Loading required package: pangaear
[ FAIL 6 | WARN 1 | SKIP 8 | PASS 31 ]
══ Skipped tests (8) ═══════════════════════════════════════════════════════════
• On CRAN (8): 'test-oai_functions.R:67:3', 'test-pg_data.R:7:3',
'test-pg_data.R:25:3', 'test-pg_data.R:32:3', 'test-pg_data.R:50:3',
'test-pg_data.R:78:3', 'test-pg_search.r:53:3', 'test-pg_search_es.R:29:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-oai_functions.R:5:5'): pg_identify() works ─────────────────────
Error in `path_to_connection(x)`: '' does not exist in current working directory
('/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pangaear.Rcheck/tests/testthat').
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oai_functions.R:4:3
2. │ └─cassette$call_block(...)
3. └─pangaear::pg_identify() at test-oai_functions.R:5:5
4. └─oai::id(url = baseoai(), ...)
5. ├─plyr::rbind.fill(lapply(url, id_, as = as, ...))
6. └─base::lapply(url, id_, as = as, ...)
7. └─oai (local) FUN(X[[i]], ...)
8. ├─oai:::get_headers(xml_children(xml2::read_xml(tt))[[3]])
9. │ ├─base::lapply(...)
10. │ └─xml2::xml_children(m)
11. │ └─xml2:::nodeset_apply(x, function(x) .Call(node_children, x, TRUE))
12. ├─xml2::xml_children(xml2::read_xml(tt))
13. │ └─xml2:::nodeset_apply(x, function(x) .Call(node_children, x, TRUE))
14. ├─xml2::read_xml(tt)
15. └─xml2:::read_xml.character(tt)
16. └─xml2:::path_to_connection(x)
17. └─xml2:::check_path(path)
18. └─cli::cli_abort(msg, call = call)
19. └─rlang::abort(...)
── Error ('test-oai_functions.R:14:5'): pg_list_sets() works ───────────────────
Error in `while_oai(url, args, token, as, ...)`: cannot parse downloaded XML, dumped raw XML to file ./oaidump_2025-07-22_04-34-52.92417630d09b38e5356bxml
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oai_functions.R:13:3
2. │ └─cassette$call_block(...)
3. └─pangaear::pg_list_sets() at test-oai_functions.R:14:5
4. └─oai::list_sets(url = baseoai(), token = token, as = as, ...)
5. └─oai:::while_oai(url, args, token, as, ...)
── Error ('test-oai_functions.R:33:5'): pg_list_metadata_formats() works ───────
Error in `path_to_connection(x)`: '' does not exist in current working directory
('/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pangaear.Rcheck/tests/testthat').
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oai_functions.R:32:3
2. │ └─cassette$call_block(...)
3. └─pangaear::pg_list_metadata_formats() at test-oai_functions.R:33:5
4. └─oai::list_metadataformats(url = baseoai(), ...)
5. └─oai:::one_mf(id, url, ...)
6. ├─xml2::read_xml(out)
7. └─xml2:::read_xml.character(out)
8. └─xml2:::path_to_connection(x)
9. └─xml2:::check_path(path)
10. └─cli::cli_abort(msg, call = call)
11. └─rlang::abort(...)
── Error ('test-oai_functions.R:55:5'): pg_get_record() works ──────────────────
Error in `path_to_connection(x)`: '' does not exist in current working directory
('/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pangaear.Rcheck/tests/testthat').
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oai_functions.R:54:3
2. │ └─cassette$call_block(...)
3. └─pangaear::pg_get_record(identifier = "oai:pangaea.de:doi:10.1594/PANGAEA.788382") at test-oai_functions.R:55:5
4. └─oai::get_records(...)
5. ├─stats::setNames(...)
6. └─base::lapply(...)
7. └─oai (local) FUN(X[[i]], ...)
8. ├─xml2::read_xml(tt)
9. └─xml2:::read_xml.character(tt)
10. └─xml2:::path_to_connection(x)
11. └─xml2:::check_path(path)
12. └─cli::cli_abort(msg, call = call)
13. └─rlang::abort(...)
── Error ('test-pg_identify.R:5:5'): pg_identify works ─────────────────────────
Error in `path_to_connection(x)`: '' does not exist in current working directory
('/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pangaear.Rcheck/tests/testthat').
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-pg_identify.R:4:3
2. │ └─cassette$call_block(...)
3. └─pangaear::pg_identify() at test-pg_identify.R:5:5
4. └─oai::id(url = baseoai(), ...)
5. ├─plyr::rbind.fill(lapply(url, id_, as = as, ...))
6. └─base::lapply(url, id_, as = as, ...)
7. └─oai (local) FUN(X[[i]], ...)
8. ├─oai:::get_headers(xml_children(xml2::read_xml(tt))[[3]])
9. │ ├─base::lapply(...)
10. │ └─xml2::xml_children(m)
11. │ └─xml2:::nodeset_apply(x, function(x) .Call(node_children, x, TRUE))
12. ├─xml2::xml_children(xml2::read_xml(tt))
13. │ └─xml2:::nodeset_apply(x, function(x) .Call(node_children, x, TRUE))
14. ├─xml2::read_xml(tt)
15. └─xml2:::read_xml.character(tt)
16. └─xml2:::path_to_connection(x)
17. └─xml2:::check_path(path)
18. └─cli::cli_abort(msg, call = call)
19. └─rlang::abort(...)
── Failure ('test-pg_search.r:20:3'): pg_search works and stuff, and stuff and things, also, it works ──
aa$supplement_to inherits from `'logical'` not `'character'`.
[ FAIL 6 | WARN 1 | SKIP 8 | PASS 31 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.1.0
Check: tests
Result: ERROR
Running ‘test-all.R’ [4s/7s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library("testthat")
> test_check("pangaear")
Loading required package: pangaear
[ FAIL 6 | WARN 1 | SKIP 8 | PASS 31 ]
══ Skipped tests (8) ═══════════════════════════════════════════════════════════
• On CRAN (8): 'test-oai_functions.R:67:3', 'test-pg_data.R:7:3',
'test-pg_data.R:25:3', 'test-pg_data.R:32:3', 'test-pg_data.R:50:3',
'test-pg_data.R:78:3', 'test-pg_search.r:53:3', 'test-pg_search_es.R:29:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-oai_functions.R:5:5'): pg_identify() works ─────────────────────
Error in `path_to_connection(x)`: '' does not exist in current working directory
('/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pangaear.Rcheck/tests/testthat').
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oai_functions.R:4:3
2. │ └─cassette$call_block(...)
3. └─pangaear::pg_identify() at test-oai_functions.R:5:5
4. └─oai::id(url = baseoai(), ...)
5. ├─plyr::rbind.fill(lapply(url, id_, as = as, ...))
6. └─base::lapply(url, id_, as = as, ...)
7. └─oai (local) FUN(X[[i]], ...)
8. ├─oai:::get_headers(xml_children(xml2::read_xml(tt))[[3]])
9. │ ├─base::lapply(...)
10. │ └─xml2::xml_children(m)
11. │ └─xml2:::nodeset_apply(x, function(x) .Call(node_children, x, TRUE))
12. ├─xml2::xml_children(xml2::read_xml(tt))
13. │ └─xml2:::nodeset_apply(x, function(x) .Call(node_children, x, TRUE))
14. ├─xml2::read_xml(tt)
15. └─xml2:::read_xml.character(tt)
16. └─xml2:::path_to_connection(x)
17. └─xml2:::check_path(path)
18. └─cli::cli_abort(msg, call = call)
19. └─rlang::abort(...)
── Error ('test-oai_functions.R:14:5'): pg_list_sets() works ───────────────────
Error in `while_oai(url, args, token, as, ...)`: cannot parse downloaded XML, dumped raw XML to file ./oaidump_2025-07-23_00-33-41.56660352c8b425184aaxml
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oai_functions.R:13:3
2. │ └─cassette$call_block(...)
3. └─pangaear::pg_list_sets() at test-oai_functions.R:14:5
4. └─oai::list_sets(url = baseoai(), token = token, as = as, ...)
5. └─oai:::while_oai(url, args, token, as, ...)
── Error ('test-oai_functions.R:33:5'): pg_list_metadata_formats() works ───────
Error in `path_to_connection(x)`: '' does not exist in current working directory
('/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pangaear.Rcheck/tests/testthat').
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oai_functions.R:32:3
2. │ └─cassette$call_block(...)
3. └─pangaear::pg_list_metadata_formats() at test-oai_functions.R:33:5
4. └─oai::list_metadataformats(url = baseoai(), ...)
5. └─oai:::one_mf(id, url, ...)
6. ├─xml2::read_xml(out)
7. └─xml2:::read_xml.character(out)
8. └─xml2:::path_to_connection(x)
9. └─xml2:::check_path(path)
10. └─cli::cli_abort(msg, call = call)
11. └─rlang::abort(...)
── Error ('test-oai_functions.R:55:5'): pg_get_record() works ──────────────────
Error in `path_to_connection(x)`: '' does not exist in current working directory
('/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pangaear.Rcheck/tests/testthat').
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oai_functions.R:54:3
2. │ └─cassette$call_block(...)
3. └─pangaear::pg_get_record(identifier = "oai:pangaea.de:doi:10.1594/PANGAEA.788382") at test-oai_functions.R:55:5
4. └─oai::get_records(...)
5. ├─stats::setNames(...)
6. └─base::lapply(...)
7. └─oai (local) FUN(X[[i]], ...)
8. ├─xml2::read_xml(tt)
9. └─xml2:::read_xml.character(tt)
10. └─xml2:::path_to_connection(x)
11. └─xml2:::check_path(path)
12. └─cli::cli_abort(msg, call = call)
13. └─rlang::abort(...)
── Error ('test-pg_identify.R:5:5'): pg_identify works ─────────────────────────
Error in `path_to_connection(x)`: '' does not exist in current working directory
('/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pangaear.Rcheck/tests/testthat').
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-pg_identify.R:4:3
2. │ └─cassette$call_block(...)
3. └─pangaear::pg_identify() at test-pg_identify.R:5:5
4. └─oai::id(url = baseoai(), ...)
5. ├─plyr::rbind.fill(lapply(url, id_, as = as, ...))
6. └─base::lapply(url, id_, as = as, ...)
7. └─oai (local) FUN(X[[i]], ...)
8. ├─oai:::get_headers(xml_children(xml2::read_xml(tt))[[3]])
9. │ ├─base::lapply(...)
10. │ └─xml2::xml_children(m)
11. │ └─xml2:::nodeset_apply(x, function(x) .Call(node_children, x, TRUE))
12. ├─xml2::xml_children(xml2::read_xml(tt))
13. │ └─xml2:::nodeset_apply(x, function(x) .Call(node_children, x, TRUE))
14. ├─xml2::read_xml(tt)
15. └─xml2:::read_xml.character(tt)
16. └─xml2:::path_to_connection(x)
17. └─xml2:::check_path(path)
18. └─cli::cli_abort(msg, call = call)
19. └─rlang::abort(...)
── Failure ('test-pg_search.r:20:3'): pg_search works and stuff, and stuff and things, also, it works ──
aa$supplement_to inherits from `'logical'` not `'character'`.
[ FAIL 6 | WARN 1 | SKIP 8 | PASS 31 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.1.0
Check: tests
Result: ERROR
Running ‘test-all.R’ [9s/13s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library("testthat")
> test_check("pangaear")
Loading required package: pangaear
[ FAIL 6 | WARN 1 | SKIP 8 | PASS 31 ]
══ Skipped tests (8) ═══════════════════════════════════════════════════════════
• On CRAN (8): 'test-oai_functions.R:67:3', 'test-pg_data.R:7:3',
'test-pg_data.R:25:3', 'test-pg_data.R:32:3', 'test-pg_data.R:50:3',
'test-pg_data.R:78:3', 'test-pg_search.r:53:3', 'test-pg_search_es.R:29:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-oai_functions.R:5:5'): pg_identify() works ─────────────────────
Error in `path_to_connection(x)`: '' does not exist in current working directory
('/data/gannet/ripley/R/packages/tests-clang/pangaear.Rcheck/tests/testthat').
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oai_functions.R:4:3
2. │ └─cassette$call_block(...)
3. └─pangaear::pg_identify() at test-oai_functions.R:5:5
4. └─oai::id(url = baseoai(), ...)
5. ├─plyr::rbind.fill(lapply(url, id_, as = as, ...))
6. └─base::lapply(url, id_, as = as, ...)
7. └─oai (local) FUN(X[[i]], ...)
8. ├─oai:::get_headers(xml_children(xml2::read_xml(tt))[[3]])
9. │ ├─base::lapply(...)
10. │ └─xml2::xml_children(m)
11. │ └─xml2:::nodeset_apply(x, function(x) .Call(node_children, x, TRUE))
12. ├─xml2::xml_children(xml2::read_xml(tt))
13. │ └─xml2:::nodeset_apply(x, function(x) .Call(node_children, x, TRUE))
14. ├─xml2::read_xml(tt)
15. └─xml2:::read_xml.character(tt)
16. └─xml2:::path_to_connection(x)
17. └─xml2:::check_path(path)
18. └─cli::cli_abort(msg, call = call)
19. └─rlang::abort(...)
── Error ('test-oai_functions.R:14:5'): pg_list_sets() works ───────────────────
Error in `while_oai(url, args, token, as, ...)`: cannot parse downloaded XML, dumped raw XML to file ./oaidump_2025-07-21_07-31-45.360201152d6435f5e193xml
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oai_functions.R:13:3
2. │ └─cassette$call_block(...)
3. └─pangaear::pg_list_sets() at test-oai_functions.R:14:5
4. └─oai::list_sets(url = baseoai(), token = token, as = as, ...)
5. └─oai:::while_oai(url, args, token, as, ...)
── Error ('test-oai_functions.R:33:5'): pg_list_metadata_formats() works ───────
Error in `path_to_connection(x)`: '' does not exist in current working directory
('/data/gannet/ripley/R/packages/tests-clang/pangaear.Rcheck/tests/testthat').
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oai_functions.R:32:3
2. │ └─cassette$call_block(...)
3. └─pangaear::pg_list_metadata_formats() at test-oai_functions.R:33:5
4. └─oai::list_metadataformats(url = baseoai(), ...)
5. └─oai:::one_mf(id, url, ...)
6. ├─xml2::read_xml(out)
7. └─xml2:::read_xml.character(out)
8. └─xml2:::path_to_connection(x)
9. └─xml2:::check_path(path)
10. └─cli::cli_abort(msg, call = call)
11. └─rlang::abort(...)
── Error ('test-oai_functions.R:55:5'): pg_get_record() works ──────────────────
Error in `path_to_connection(x)`: '' does not exist in current working directory
('/data/gannet/ripley/R/packages/tests-clang/pangaear.Rcheck/tests/testthat').
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oai_functions.R:54:3
2. │ └─cassette$call_block(...)
3. └─pangaear::pg_get_record(identifier = "oai:pangaea.de:doi:10.1594/PANGAEA.788382") at test-oai_functions.R:55:5
4. └─oai::get_records(...)
5. ├─stats::setNames(...)
6. └─base::lapply(...)
7. └─oai (local) FUN(X[[i]], ...)
8. ├─xml2::read_xml(tt)
9. └─xml2:::read_xml.character(tt)
10. └─xml2:::path_to_connection(x)
11. └─xml2:::check_path(path)
12. └─cli::cli_abort(msg, call = call)
13. └─rlang::abort(...)
── Error ('test-pg_identify.R:5:5'): pg_identify works ─────────────────────────
Error in `path_to_connection(x)`: '' does not exist in current working directory
('/data/gannet/ripley/R/packages/tests-clang/pangaear.Rcheck/tests/testthat').
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-pg_identify.R:4:3
2. │ └─cassette$call_block(...)
3. └─pangaear::pg_identify() at test-pg_identify.R:5:5
4. └─oai::id(url = baseoai(), ...)
5. ├─plyr::rbind.fill(lapply(url, id_, as = as, ...))
6. └─base::lapply(url, id_, as = as, ...)
7. └─oai (local) FUN(X[[i]], ...)
8. ├─oai:::get_headers(xml_children(xml2::read_xml(tt))[[3]])
9. │ ├─base::lapply(...)
10. │ └─xml2::xml_children(m)
11. │ └─xml2:::nodeset_apply(x, function(x) .Call(node_children, x, TRUE))
12. ├─xml2::xml_children(xml2::read_xml(tt))
13. │ └─xml2:::nodeset_apply(x, function(x) .Call(node_children, x, TRUE))
14. ├─xml2::read_xml(tt)
15. └─xml2:::read_xml.character(tt)
16. └─xml2:::path_to_connection(x)
17. └─xml2:::check_path(path)
18. └─cli::cli_abort(msg, call = call)
19. └─rlang::abort(...)
── Failure ('test-pg_search.r:20:3'): pg_search works and stuff, and stuff and things, also, it works ──
aa$supplement_to inherits from `'logical'` not `'character'`.
[ FAIL 6 | WARN 1 | SKIP 8 | PASS 31 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.1.0
Check: tests
Result: ERROR
Running ‘test-all.R’ [8s/14s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library("testthat")
> test_check("pangaear")
Loading required package: pangaear
[ FAIL 6 | WARN 1 | SKIP 8 | PASS 31 ]
══ Skipped tests (8) ═══════════════════════════════════════════════════════════
• On CRAN (8): 'test-oai_functions.R:67:3', 'test-pg_data.R:7:3',
'test-pg_data.R:25:3', 'test-pg_data.R:32:3', 'test-pg_data.R:50:3',
'test-pg_data.R:78:3', 'test-pg_search.r:53:3', 'test-pg_search_es.R:29:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-oai_functions.R:5:5'): pg_identify() works ─────────────────────
Error in `path_to_connection(x)`: '' does not exist in current working directory
('/data/gannet/ripley/R/packages/tests-devel/pangaear.Rcheck/tests/testthat').
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oai_functions.R:4:3
2. │ └─cassette$call_block(...)
3. └─pangaear::pg_identify() at test-oai_functions.R:5:5
4. └─oai::id(url = baseoai(), ...)
5. ├─plyr::rbind.fill(lapply(url, id_, as = as, ...))
6. └─base::lapply(url, id_, as = as, ...)
7. └─oai (local) FUN(X[[i]], ...)
8. ├─oai:::get_headers(xml_children(xml2::read_xml(tt))[[3]])
9. │ ├─base::lapply(...)
10. │ └─xml2::xml_children(m)
11. │ └─xml2:::nodeset_apply(x, function(x) .Call(node_children, x, TRUE))
12. ├─xml2::xml_children(xml2::read_xml(tt))
13. │ └─xml2:::nodeset_apply(x, function(x) .Call(node_children, x, TRUE))
14. ├─xml2::read_xml(tt)
15. └─xml2:::read_xml.character(tt)
16. └─xml2:::path_to_connection(x)
17. └─xml2:::check_path(path)
18. └─cli::cli_abort(msg, call = call)
19. └─rlang::abort(...)
── Error ('test-oai_functions.R:14:5'): pg_list_sets() works ───────────────────
Error in `while_oai(url, args, token, as, ...)`: cannot parse downloaded XML, dumped raw XML to file ./oaidump_2025-07-21_07-06-57.6967271329a13f60dc3fxml
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oai_functions.R:13:3
2. │ └─cassette$call_block(...)
3. └─pangaear::pg_list_sets() at test-oai_functions.R:14:5
4. └─oai::list_sets(url = baseoai(), token = token, as = as, ...)
5. └─oai:::while_oai(url, args, token, as, ...)
── Error ('test-oai_functions.R:33:5'): pg_list_metadata_formats() works ───────
Error in `path_to_connection(x)`: '' does not exist in current working directory
('/data/gannet/ripley/R/packages/tests-devel/pangaear.Rcheck/tests/testthat').
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oai_functions.R:32:3
2. │ └─cassette$call_block(...)
3. └─pangaear::pg_list_metadata_formats() at test-oai_functions.R:33:5
4. └─oai::list_metadataformats(url = baseoai(), ...)
5. └─oai:::one_mf(id, url, ...)
6. ├─xml2::read_xml(out)
7. └─xml2:::read_xml.character(out)
8. └─xml2:::path_to_connection(x)
9. └─xml2:::check_path(path)
10. └─cli::cli_abort(msg, call = call)
11. └─rlang::abort(...)
── Error ('test-oai_functions.R:55:5'): pg_get_record() works ──────────────────
Error in `path_to_connection(x)`: '' does not exist in current working directory
('/data/gannet/ripley/R/packages/tests-devel/pangaear.Rcheck/tests/testthat').
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oai_functions.R:54:3
2. │ └─cassette$call_block(...)
3. └─pangaear::pg_get_record(identifier = "oai:pangaea.de:doi:10.1594/PANGAEA.788382") at test-oai_functions.R:55:5
4. └─oai::get_records(...)
5. ├─stats::setNames(...)
6. └─base::lapply(...)
7. └─oai (local) FUN(X[[i]], ...)
8. ├─xml2::read_xml(tt)
9. └─xml2:::read_xml.character(tt)
10. └─xml2:::path_to_connection(x)
11. └─xml2:::check_path(path)
12. └─cli::cli_abort(msg, call = call)
13. └─rlang::abort(...)
── Error ('test-pg_identify.R:5:5'): pg_identify works ─────────────────────────
Error in `path_to_connection(x)`: '' does not exist in current working directory
('/data/gannet/ripley/R/packages/tests-devel/pangaear.Rcheck/tests/testthat').
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-pg_identify.R:4:3
2. │ └─cassette$call_block(...)
3. └─pangaear::pg_identify() at test-pg_identify.R:5:5
4. └─oai::id(url = baseoai(), ...)
5. ├─plyr::rbind.fill(lapply(url, id_, as = as, ...))
6. └─base::lapply(url, id_, as = as, ...)
7. └─oai (local) FUN(X[[i]], ...)
8. ├─oai:::get_headers(xml_children(xml2::read_xml(tt))[[3]])
9. │ ├─base::lapply(...)
10. │ └─xml2::xml_children(m)
11. │ └─xml2:::nodeset_apply(x, function(x) .Call(node_children, x, TRUE))
12. ├─xml2::xml_children(xml2::read_xml(tt))
13. │ └─xml2:::nodeset_apply(x, function(x) .Call(node_children, x, TRUE))
14. ├─xml2::read_xml(tt)
15. └─xml2:::read_xml.character(tt)
16. └─xml2:::path_to_connection(x)
17. └─xml2:::check_path(path)
18. └─cli::cli_abort(msg, call = call)
19. └─rlang::abort(...)
── Failure ('test-pg_search.r:20:3'): pg_search works and stuff, and stuff and things, also, it works ──
aa$supplement_to inherits from `'logical'` not `'character'`.
[ FAIL 6 | WARN 1 | SKIP 8 | PASS 31 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.1.0
Check: tests
Result: ERROR
Running 'test-all.R' [7s]
Running the tests in 'tests/test-all.R' failed.
Complete output:
> library("testthat")
> test_check("pangaear")
Loading required package: pangaear
[ FAIL 6 | WARN 1 | SKIP 8 | PASS 31 ]
══ Skipped tests (8) ═══════════════════════════════════════════════════════════
• On CRAN (8): 'test-oai_functions.R:67:3', 'test-pg_data.R:7:3',
'test-pg_data.R:25:3', 'test-pg_data.R:32:3', 'test-pg_data.R:50:3',
'test-pg_data.R:78:3', 'test-pg_search.r:53:3', 'test-pg_search_es.R:29:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-oai_functions.R:5:5'): pg_identify() works ─────────────────────
Error in `path_to_connection(x)`: '' does not exist in current working directory
('d:/Rcompile/CRANpkg/local/4.6/pangaear.Rcheck/tests/testthat').
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oai_functions.R:4:3
2. │ └─cassette$call_block(...)
3. └─pangaear::pg_identify() at test-oai_functions.R:5:5
4. └─oai::id(url = baseoai(), ...)
5. ├─plyr::rbind.fill(lapply(url, id_, as = as, ...))
6. └─base::lapply(url, id_, as = as, ...)
7. └─oai (local) FUN(X[[i]], ...)
8. ├─oai:::get_headers(xml_children(xml2::read_xml(tt))[[3]])
9. │ ├─base::lapply(...)
10. │ └─xml2::xml_children(m)
11. │ └─xml2:::nodeset_apply(x, function(x) .Call(node_children, x, TRUE))
12. ├─xml2::xml_children(xml2::read_xml(tt))
13. │ └─xml2:::nodeset_apply(x, function(x) .Call(node_children, x, TRUE))
14. ├─xml2::read_xml(tt)
15. └─xml2:::read_xml.character(tt)
16. └─xml2:::path_to_connection(x)
17. └─xml2:::check_path(path)
18. └─cli::cli_abort(msg, call = call)
19. └─rlang::abort(...)
── Error ('test-oai_functions.R:14:5'): pg_list_sets() works ───────────────────
Error in `while_oai(url, args, token, as, ...)`: cannot parse downloaded XML, dumped raw XML to file .\oaidump_2025-07-22_12-34-36.2242833230c75392af5xml
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oai_functions.R:13:3
2. │ └─cassette$call_block(...)
3. └─pangaear::pg_list_sets() at test-oai_functions.R:14:5
4. └─oai::list_sets(url = baseoai(), token = token, as = as, ...)
5. └─oai:::while_oai(url, args, token, as, ...)
── Error ('test-oai_functions.R:33:5'): pg_list_metadata_formats() works ───────
Error in `path_to_connection(x)`: '' does not exist in current working directory
('d:/Rcompile/CRANpkg/local/4.6/pangaear.Rcheck/tests/testthat').
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oai_functions.R:32:3
2. │ └─cassette$call_block(...)
3. └─pangaear::pg_list_metadata_formats() at test-oai_functions.R:33:5
4. └─oai::list_metadataformats(url = baseoai(), ...)
5. └─oai:::one_mf(id, url, ...)
6. ├─xml2::read_xml(out)
7. └─xml2:::read_xml.character(out)
8. └─xml2:::path_to_connection(x)
9. └─xml2:::check_path(path)
10. └─cli::cli_abort(msg, call = call)
11. └─rlang::abort(...)
── Error ('test-oai_functions.R:55:5'): pg_get_record() works ──────────────────
Error in `path_to_connection(x)`: '' does not exist in current working directory
('d:/Rcompile/CRANpkg/local/4.6/pangaear.Rcheck/tests/testthat').
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-oai_functions.R:54:3
2. │ └─cassette$call_block(...)
3. └─pangaear::pg_get_record(identifier = "oai:pangaea.de:doi:10.1594/PANGAEA.788382") at test-oai_functions.R:55:5
4. └─oai::get_records(...)
5. ├─stats::setNames(...)
6. └─base::lapply(...)
7. └─oai (local) FUN(X[[i]], ...)
8. ├─xml2::read_xml(tt)
9. └─xml2:::read_xml.character(tt)
10. └─xml2:::path_to_connection(x)
11. └─xml2:::check_path(path)
12. └─cli::cli_abort(msg, call = call)
13. └─rlang::abort(...)
── Error ('test-pg_identify.R:5:5'): pg_identify works ─────────────────────────
Error in `path_to_connection(x)`: '' does not exist in current working directory
('d:/Rcompile/CRANpkg/local/4.6/pangaear.Rcheck/tests/testthat').
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-pg_identify.R:4:3
2. │ └─cassette$call_block(...)
3. └─pangaear::pg_identify() at test-pg_identify.R:5:5
4. └─oai::id(url = baseoai(), ...)
5. ├─plyr::rbind.fill(lapply(url, id_, as = as, ...))
6. └─base::lapply(url, id_, as = as, ...)
7. └─oai (local) FUN(X[[i]], ...)
8. ├─oai:::get_headers(xml_children(xml2::read_xml(tt))[[3]])
9. │ ├─base::lapply(...)
10. │ └─xml2::xml_children(m)
11. │ └─xml2:::nodeset_apply(x, function(x) .Call(node_children, x, TRUE))
12. ├─xml2::xml_children(xml2::read_xml(tt))
13. │ └─xml2:::nodeset_apply(x, function(x) .Call(node_children, x, TRUE))
14. ├─xml2::read_xml(tt)
15. └─xml2:::read_xml.character(tt)
16. └─xml2:::path_to_connection(x)
17. └─xml2:::check_path(path)
18. └─cli::cli_abort(msg, call = call)
19. └─rlang::abort(...)
── Failure ('test-pg_search.r:20:3'): pg_search works and stuff, and stuff and things, also, it works ──
aa$supplement_to inherits from `'logical'` not `'character'`.
[ FAIL 6 | WARN 1 | SKIP 8 | PASS 31 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Current CRAN status: NOTE: 5, OK: 8
Version: 0.3.0
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Scott Chamberlain <myrmecocystus@gmail.com>’
Found the following (possibly) invalid file URI:
URI: CODE_OF_CONDUCT.md
From: README.md
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.3.0
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 2, OK: 11
Version: 0.1.0
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Scott Chamberlain <myrmecocystus@gmail.com>’
Found the following (possibly) invalid file URI:
URI: CONDUCT.md
From: README.md
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 13
Version: 0.4.0
Check: Rd files
Result: NOTE
checkRd: (-1) db_compact.Rd:41: Lost braces; missing escapes or markup?
41 | database structure will be set to true. See GET /{db}. You can also obtain a list of
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: NOTE: 13
Version: 1.2.0
Check: Rd files
Result: NOTE
checkRd: (-1) solr_mlt.Rd:70: Lost braces; missing escapes or markup?
70 | TermVector DEFAULT_FIELD_NAMES = new String[] {"contents"}
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: ERROR: 5, NOTE: 3, OK: 5
Version: 1.7.0
Check: DESCRIPTION meta-information
Result: NOTE
Author field differs from that derived from Authors@R
Author: ‘Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>), Aaron Wolen [aut] (<https://orcid.org/0000-0003-2542-2202>), Maëlle Salmon [aut] (<https://orcid.org/0000-0002-2815-0399>), Daniel Possenriede [aut] (<https://orcid.org/0000-0002-6738-9845>), rOpenSci [fnd] (019jywm96)’
Authors@R: ‘Scott Chamberlain [aut, cre] (ORCID: <https://orcid.org/0000-0003-1444-9135>), Aaron Wolen [aut] (ORCID: <https://orcid.org/0000-0003-2542-2202>), Maëlle Salmon [aut] (ORCID: <https://orcid.org/0000-0002-2815-0399>), Daniel Possenriede [aut] (ORCID: <https://orcid.org/0000-0002-6738-9845>), rOpenSci [fnd] (ROR: <https://ror.org/019jywm96>)’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.7.0
Check: tests
Result: ERROR
Running ‘test-all.R’ [10s/16s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library("testthat")
> library('vcr')
> test_check("vcr")
using base url for tests: https://hb.cran.dev
[ FAIL 1 | WARN 10 | SKIP 50 | PASS 501 ]
══ Skipped tests (50) ══════════════════════════════════════════════════════════
• Did not find: '../../man/vcr_configure.Rd' (1): 'test-configuration.R:53:3'
• On CRAN (49): 'test-RequestHandler.R:1:1', 'test-RequestIgnorer.R:41:3',
'test-RequestIgnorer.R:83:3', 'test-ause_cassette.R:6:3',
'test-ause_cassette_match_body_empty_body.R:2:3',
'test-ause_cassette_match_query.R:11:3',
'test-ause_cassette_match_requests_on.R:2:3',
'test-ause_cassette_match_requests_on.R:129:3',
'test-ause_cassette_match_requests_on_json.R:6:3',
'test-ause_cassette_match_requests_on_json.R:63:3',
'test-ause_cassette_re_record.R:15:3',
'test-ause_cassette_record_modes.R:13:3',
'test-ause_cassette_record_modes.R:54:3',
'test-ause_cassette_record_modes.R:80:3',
'test-ause_cassette_record_modes.R:126:3',
'test-ause_cassette_write_to_disk.R:8:3',
'test-ause_cassette_write_to_disk.R:39:3',
'test-ause_cassette_write_to_disk.R:67:3',
'test-ause_cassette_write_to_disk_binary_files.R:7:3',
'test-ause_cassette_write_to_disk_binary_files.R:42:3',
'test-ause_cassette_write_to_disk_binary_files.R:104:3',
'test-binary_images.R:7:3', 'test-binary_images.R:57:3',
'test-check_cassette_names.R:2:3', 'test-crul.R:1:1',
'test-filter-sensitive-strings.R:1:1', 'test-filter_headers.R:4:3',
'test-filter_headers.R:61:3', 'test-filter_headers.R:106:3',
'test-filter_headers.R:138:3', 'test-filter_headers.R:185:3',
'test-filter_headers.R:233:3', 'test-filter_query_parameters.R:10:3',
'test-filter_query_parameters.R:57:3',
'test-filter_query_parameters.R:104:3',
'test-filter_query_parameters.R:154:3',
'test-filter_query_parameters.R:199:3', 'test-httr.R:1:1',
'test-httr2.R:1:1', 'test-request_summary.R:10:3',
'test-response_summary.R:13:3', 'test-response_summary.R:29:3',
'test-response_summary.R:47:3', 'test-serializers_json.R:22:3',
'test-use_vcr.R:4:3', 'test-vcr_test_path.R:2:3',
'test-vcr_test_path.R:24:3', 'test-vcr_test_path.R:46:3',
'test-write_disk_path_package_context.R:4:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-localhost_port.R:25:3'): testing against localhost port works ──
Error in `readLines(con, warn = readLines.warn)`: cannot open the connection
Backtrace:
▆
1. └─yaml::yaml.load_file(path) at test-localhost_port.R:25:3
2. ├─yaml::yaml.load(...)
3. │ └─base::paste(string, collapse = "\n")
4. └─base::readLines(con, warn = readLines.warn)
[ FAIL 1 | WARN 10 | SKIP 50 | PASS 501 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.7.0
Check: tests
Result: ERROR
Running ‘test-all.R’ [6s/13s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library("testthat")
> library('vcr')
> test_check("vcr")
using base url for tests: https://hb.cran.dev
[ FAIL 1 | WARN 10 | SKIP 50 | PASS 501 ]
══ Skipped tests (50) ══════════════════════════════════════════════════════════
• Did not find: '../../man/vcr_configure.Rd' (1): 'test-configuration.R:53:3'
• On CRAN (49): 'test-RequestHandler.R:1:1', 'test-RequestIgnorer.R:41:3',
'test-RequestIgnorer.R:83:3', 'test-ause_cassette.R:6:3',
'test-ause_cassette_match_body_empty_body.R:2:3',
'test-ause_cassette_match_query.R:11:3',
'test-ause_cassette_match_requests_on.R:2:3',
'test-ause_cassette_match_requests_on.R:129:3',
'test-ause_cassette_match_requests_on_json.R:6:3',
'test-ause_cassette_match_requests_on_json.R:63:3',
'test-ause_cassette_re_record.R:15:3',
'test-ause_cassette_record_modes.R:13:3',
'test-ause_cassette_record_modes.R:54:3',
'test-ause_cassette_record_modes.R:80:3',
'test-ause_cassette_record_modes.R:126:3',
'test-ause_cassette_write_to_disk.R:8:3',
'test-ause_cassette_write_to_disk.R:39:3',
'test-ause_cassette_write_to_disk.R:67:3',
'test-ause_cassette_write_to_disk_binary_files.R:7:3',
'test-ause_cassette_write_to_disk_binary_files.R:42:3',
'test-ause_cassette_write_to_disk_binary_files.R:104:3',
'test-binary_images.R:7:3', 'test-binary_images.R:57:3',
'test-check_cassette_names.R:2:3', 'test-crul.R:1:1',
'test-filter-sensitive-strings.R:1:1', 'test-filter_headers.R:4:3',
'test-filter_headers.R:61:3', 'test-filter_headers.R:106:3',
'test-filter_headers.R:138:3', 'test-filter_headers.R:185:3',
'test-filter_headers.R:233:3', 'test-filter_query_parameters.R:10:3',
'test-filter_query_parameters.R:57:3',
'test-filter_query_parameters.R:104:3',
'test-filter_query_parameters.R:154:3',
'test-filter_query_parameters.R:199:3', 'test-httr.R:1:1',
'test-httr2.R:1:1', 'test-request_summary.R:10:3',
'test-response_summary.R:13:3', 'test-response_summary.R:29:3',
'test-response_summary.R:47:3', 'test-serializers_json.R:22:3',
'test-use_vcr.R:4:3', 'test-vcr_test_path.R:2:3',
'test-vcr_test_path.R:24:3', 'test-vcr_test_path.R:46:3',
'test-write_disk_path_package_context.R:4:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-localhost_port.R:25:3'): testing against localhost port works ──
Error in `readLines(con, warn = readLines.warn)`: cannot open the connection
Backtrace:
▆
1. └─yaml::yaml.load_file(path) at test-localhost_port.R:25:3
2. ├─yaml::yaml.load(...)
3. │ └─base::paste(string, collapse = "\n")
4. └─base::readLines(con, warn = readLines.warn)
[ FAIL 1 | WARN 10 | SKIP 50 | PASS 501 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.7.0
Check: tests
Result: ERROR
Running ‘test-all.R’ [16s/46s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library("testthat")
> library('vcr')
> test_check("vcr")
using base url for tests: https://hb.cran.dev
[ FAIL 1 | WARN 10 | SKIP 50 | PASS 501 ]
══ Skipped tests (50) ══════════════════════════════════════════════════════════
• Did not find: '../../man/vcr_configure.Rd' (1): 'test-configuration.R:53:3'
• On CRAN (49): 'test-RequestHandler.R:1:1', 'test-RequestIgnorer.R:41:3',
'test-RequestIgnorer.R:83:3', 'test-ause_cassette.R:6:3',
'test-ause_cassette_match_body_empty_body.R:2:3',
'test-ause_cassette_match_query.R:11:3',
'test-ause_cassette_match_requests_on.R:2:3',
'test-ause_cassette_match_requests_on.R:129:3',
'test-ause_cassette_match_requests_on_json.R:6:3',
'test-ause_cassette_match_requests_on_json.R:63:3',
'test-ause_cassette_re_record.R:15:3',
'test-ause_cassette_record_modes.R:13:3',
'test-ause_cassette_record_modes.R:54:3',
'test-ause_cassette_record_modes.R:80:3',
'test-ause_cassette_record_modes.R:126:3',
'test-ause_cassette_write_to_disk.R:8:3',
'test-ause_cassette_write_to_disk.R:39:3',
'test-ause_cassette_write_to_disk.R:67:3',
'test-ause_cassette_write_to_disk_binary_files.R:7:3',
'test-ause_cassette_write_to_disk_binary_files.R:42:3',
'test-ause_cassette_write_to_disk_binary_files.R:104:3',
'test-binary_images.R:7:3', 'test-binary_images.R:57:3',
'test-check_cassette_names.R:2:3', 'test-crul.R:1:1',
'test-filter-sensitive-strings.R:1:1', 'test-filter_headers.R:4:3',
'test-filter_headers.R:61:3', 'test-filter_headers.R:106:3',
'test-filter_headers.R:138:3', 'test-filter_headers.R:185:3',
'test-filter_headers.R:233:3', 'test-filter_query_parameters.R:10:3',
'test-filter_query_parameters.R:57:3',
'test-filter_query_parameters.R:104:3',
'test-filter_query_parameters.R:154:3',
'test-filter_query_parameters.R:199:3', 'test-httr.R:1:1',
'test-httr2.R:1:1', 'test-request_summary.R:10:3',
'test-response_summary.R:13:3', 'test-response_summary.R:29:3',
'test-response_summary.R:47:3', 'test-serializers_json.R:22:3',
'test-use_vcr.R:4:3', 'test-vcr_test_path.R:2:3',
'test-vcr_test_path.R:24:3', 'test-vcr_test_path.R:46:3',
'test-write_disk_path_package_context.R:4:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-localhost_port.R:25:3'): testing against localhost port works ──
Error in `readLines(con, warn = readLines.warn)`: cannot open the connection
Backtrace:
▆
1. └─yaml::yaml.load_file(path) at test-localhost_port.R:25:3
2. ├─yaml::yaml.load(...)
3. │ └─base::paste(string, collapse = "\n")
4. └─base::readLines(con, warn = readLines.warn)
[ FAIL 1 | WARN 10 | SKIP 50 | PASS 501 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.7.0
Check: tests
Result: ERROR
Running ‘test-all.R’ [15s/69s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library("testthat")
> library('vcr')
> test_check("vcr")
using base url for tests: https://hb.cran.dev
[ FAIL 1 | WARN 10 | SKIP 50 | PASS 501 ]
══ Skipped tests (50) ══════════════════════════════════════════════════════════
• Did not find: '../../man/vcr_configure.Rd' (1): 'test-configuration.R:53:3'
• On CRAN (49): 'test-RequestHandler.R:1:1', 'test-RequestIgnorer.R:41:3',
'test-RequestIgnorer.R:83:3', 'test-ause_cassette.R:6:3',
'test-ause_cassette_match_body_empty_body.R:2:3',
'test-ause_cassette_match_query.R:11:3',
'test-ause_cassette_match_requests_on.R:2:3',
'test-ause_cassette_match_requests_on.R:129:3',
'test-ause_cassette_match_requests_on_json.R:6:3',
'test-ause_cassette_match_requests_on_json.R:63:3',
'test-ause_cassette_re_record.R:15:3',
'test-ause_cassette_record_modes.R:13:3',
'test-ause_cassette_record_modes.R:54:3',
'test-ause_cassette_record_modes.R:80:3',
'test-ause_cassette_record_modes.R:126:3',
'test-ause_cassette_write_to_disk.R:8:3',
'test-ause_cassette_write_to_disk.R:39:3',
'test-ause_cassette_write_to_disk.R:67:3',
'test-ause_cassette_write_to_disk_binary_files.R:7:3',
'test-ause_cassette_write_to_disk_binary_files.R:42:3',
'test-ause_cassette_write_to_disk_binary_files.R:104:3',
'test-binary_images.R:7:3', 'test-binary_images.R:57:3',
'test-check_cassette_names.R:2:3', 'test-crul.R:1:1',
'test-filter-sensitive-strings.R:1:1', 'test-filter_headers.R:4:3',
'test-filter_headers.R:61:3', 'test-filter_headers.R:106:3',
'test-filter_headers.R:138:3', 'test-filter_headers.R:185:3',
'test-filter_headers.R:233:3', 'test-filter_query_parameters.R:10:3',
'test-filter_query_parameters.R:57:3',
'test-filter_query_parameters.R:104:3',
'test-filter_query_parameters.R:154:3',
'test-filter_query_parameters.R:199:3', 'test-httr.R:1:1',
'test-httr2.R:1:1', 'test-request_summary.R:10:3',
'test-response_summary.R:13:3', 'test-response_summary.R:29:3',
'test-response_summary.R:47:3', 'test-serializers_json.R:22:3',
'test-use_vcr.R:4:3', 'test-vcr_test_path.R:2:3',
'test-vcr_test_path.R:24:3', 'test-vcr_test_path.R:46:3',
'test-write_disk_path_package_context.R:4:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-localhost_port.R:25:3'): testing against localhost port works ──
Error in `readLines(con, warn = readLines.warn)`: cannot open the connection
Backtrace:
▆
1. └─yaml::yaml.load_file(path) at test-localhost_port.R:25:3
2. ├─yaml::yaml.load(...)
3. │ └─base::paste(string, collapse = "\n")
4. └─base::readLines(con, warn = readLines.warn)
[ FAIL 1 | WARN 10 | SKIP 50 | PASS 501 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.7.0
Check: tests
Result: ERROR
Running 'test-all.R' [12s]
Running the tests in 'tests/test-all.R' failed.
Complete output:
> library("testthat")
> library('vcr')
> test_check("vcr")
using base url for tests: https://hb.cran.dev
[ FAIL 1 | WARN 10 | SKIP 50 | PASS 501 ]
══ Skipped tests (50) ══════════════════════════════════════════════════════════
• Did not find: '../../man/vcr_configure.Rd' (1): 'test-configuration.R:53:3'
• On CRAN (49): 'test-RequestHandler.R:1:1', 'test-RequestIgnorer.R:41:3',
'test-RequestIgnorer.R:83:3', 'test-ause_cassette.R:6:3',
'test-ause_cassette_match_body_empty_body.R:2:3',
'test-ause_cassette_match_query.R:11:3',
'test-ause_cassette_match_requests_on.R:2:3',
'test-ause_cassette_match_requests_on.R:129:3',
'test-ause_cassette_match_requests_on_json.R:6:3',
'test-ause_cassette_match_requests_on_json.R:63:3',
'test-ause_cassette_re_record.R:15:3',
'test-ause_cassette_record_modes.R:13:3',
'test-ause_cassette_record_modes.R:54:3',
'test-ause_cassette_record_modes.R:80:3',
'test-ause_cassette_record_modes.R:126:3',
'test-ause_cassette_write_to_disk.R:8:3',
'test-ause_cassette_write_to_disk.R:39:3',
'test-ause_cassette_write_to_disk.R:67:3',
'test-ause_cassette_write_to_disk_binary_files.R:7:3',
'test-ause_cassette_write_to_disk_binary_files.R:42:3',
'test-ause_cassette_write_to_disk_binary_files.R:104:3',
'test-binary_images.R:7:3', 'test-binary_images.R:57:3',
'test-check_cassette_names.R:2:3', 'test-crul.R:1:1',
'test-filter-sensitive-strings.R:1:1', 'test-filter_headers.R:4:3',
'test-filter_headers.R:61:3', 'test-filter_headers.R:106:3',
'test-filter_headers.R:138:3', 'test-filter_headers.R:185:3',
'test-filter_headers.R:233:3', 'test-filter_query_parameters.R:10:3',
'test-filter_query_parameters.R:57:3',
'test-filter_query_parameters.R:104:3',
'test-filter_query_parameters.R:154:3',
'test-filter_query_parameters.R:199:3', 'test-httr.R:1:1',
'test-httr2.R:1:1', 'test-request_summary.R:10:3',
'test-response_summary.R:13:3', 'test-response_summary.R:29:3',
'test-response_summary.R:47:3', 'test-serializers_json.R:22:3',
'test-use_vcr.R:4:3', 'test-vcr_test_path.R:2:3',
'test-vcr_test_path.R:24:3', 'test-vcr_test_path.R:46:3',
'test-write_disk_path_package_context.R:4:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-localhost_port.R:25:3'): testing against localhost port works ──
Error in `readLines(con, warn = readLines.warn)`: cannot open the connection
Backtrace:
▆
1. └─yaml::yaml.load_file(path) at test-localhost_port.R:25:3
2. ├─yaml::yaml.load(...)
3. │ └─base::paste(string, collapse = "\n")
4. └─base::readLines(con, warn = readLines.warn)
[ FAIL 1 | WARN 10 | SKIP 50 | PASS 501 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.7.0
Check: installed package size
Result: NOTE
installed size is 8.6Mb
sub-directories of 1Mb or more:
doc 7.5Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64