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load_seq
load_aligned_seqs
load_unaligned_seqs
load_delimited
load_table
load_tree
load_annotations
open_data_store
open

make_seq
make_aligned_seqs
make_unaligned_seqs
make_table
make_tree

get_code
get_moltype
get_model

available_codes
available_moltypes
available_models
available_apps

annotation
- cogent3.core.annotation.Feature
annotation_db
alignment
sequence
seq_storage
- cogent3.core.seq_storage.SeqsData
- cogent3.core.seq_storage.AlignedSeqsData
seqview
slice_record
- cogent3.core.slice_record.SliceRecord
genetic_code
- cogent3.core.genetic_code.GeneticCode
moltype
- cogent3.core.moltype.MolType
alphabet
table
tree
- cogent3.core.tree.PhyloNode

API
alphabet
cogent3.core.alphabet.PhredEncoding

cogent3.core.alphabet.PhredEncoding#

class PhredEncoding(*values)#: fastq quality score encoding schemes

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cogent3.core.alphabet.SenseCodonAlphabet

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cogent3.core.alphabet.bytes_to_array

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PhredEncoding

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