Last updated on 2026-03-28 20:52:07 CET.
| Package | ERROR | OK |
|---|---|---|
| algaeClassify | 6 | 8 |
Current CRAN status: ERROR: 6, OK: 8
Version: 2.0.5
Check: examples
Result: ERROR
Running examples in ‘algaeClassify-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: genus_search_itis
> ### Title: Wrapper function for several functions in ritis:: Searches ITIS
> ### database for matches to a genus name
> ### Aliases: genus_search_itis
>
> ### ** Examples
>
> genus='Anabaena'
> genus_search_itis(genus,higher=FALSE)
Error:
! The `x` argument of `as_tibble()` can't be missing as of tibble 3.0.0.
Backtrace:
▆
1. └─algaeClassify::genus_search_itis(genus, higher = FALSE)
2. └─ritis::accepted_names(tsn = tsn)
3. └─ritis:::parse_raw(out)
4. ├─tibble::as_tibble()
5. └─tibble:::as_tibble.NULL()
6. └─lifecycle::deprecate_stop("3.0.0", "as_tibble(x = 'can\\'t be missing')")
7. └─lifecycle:::deprecate_stop0(msg)
8. └─rlang::cnd_signal(...)
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 2.0.5
Check: examples
Result: ERROR
Running examples in ‘algaeClassify-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: genus_search_itis
> ### Title: Wrapper function for several functions in ritis:: Searches ITIS
> ### database for matches to a genus name
> ### Aliases: genus_search_itis
>
> ### ** Examples
>
> genus='Anabaena'
> genus_search_itis(genus,higher=FALSE)
Error: lexical error: invalid char in json text.
<html><head></head><body><p>Que
(right here) ------^
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.0.5
Check: examples
Result: ERROR
Running examples in ‘algaeClassify-Ex.R’ failed
The error most likely occurred in:
> ### Name: genus_search_itis
> ### Title: Wrapper function for several functions in ritis:: Searches ITIS
> ### database for matches to a genus name
> ### Aliases: genus_search_itis
>
> ### ** Examples
>
> genus='Anabaena'
> genus_search_itis(genus,higher=FALSE)
Error: lexical error: invalid char in json text.
<html><head></head><body><p>Que
(right here) ------^
Execution halted
Flavors: r-devel-linux-x86_64-fedora-gcc, r-release-windows-x86_64
Version: 2.0.5
Check: examples
Result: ERROR
Running examples in ‘algaeClassify-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: itis_search_df
> ### Title: Wrapper function for applying genus_search_itis and
> ### species_search_itis to a whole data.frame containing scientific names
> ### Aliases: itis_search_df
>
> ### ** Examples
>
> data(lakegeneva)
> #example dataset
>
> new.lakegeneva <- genus_species_extract(lakegeneva[1,],'phyto_name')
> new.lakegeneva$genus_species <- trimws(paste(new.lakegeneva$genus,
+ new.lakegeneva$species))
> #checking for genus-only name matches in ITIS, and extracting higher taxonomy
> #flagging names with imperfect or no matches
>
> lakegeneva.genus.itischeck <-
+ itis_search_df(new.lakegeneva,"genus_species")
Error in curl::curl_fetch_memory(x$url$url, handle = x$url$handle) :
Failure when receiving data from the peer [services.itis.gov]:
Recv failure: Connection reset by peer
Calls: itis_search_df ... <Anonymous> -> crul_fetch -> <Anonymous> -> raise_libcurl_error
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
genus_search_itis 1.458 0.07 5.434
Flavor: r-patched-linux-x86_64
Version: 2.0.5
Check: examples
Result: ERROR
Running examples in 'algaeClassify-Ex.R' failed
The error most likely occurred in:
> ### Name: itis_search_df
> ### Title: Wrapper function for applying genus_search_itis and
> ### species_search_itis to a whole data.frame containing scientific names
> ### Aliases: itis_search_df
>
> ### ** Examples
>
> data(lakegeneva)
> #example dataset
>
> new.lakegeneva <- genus_species_extract(lakegeneva[1,],'phyto_name')
> new.lakegeneva$genus_species <- trimws(paste(new.lakegeneva$genus,
+ new.lakegeneva$species))
> #checking for genus-only name matches in ITIS, and extracting higher taxonomy
> #flagging names with imperfect or no matches
>
> lakegeneva.genus.itischeck <-
+ itis_search_df(new.lakegeneva,"genus_species")
Error in curl::curl_fetch_memory(x$url$url, handle = x$url$handle) :
Failure when receiving data from the peer [services.itis.gov]:
Recv failure: Connection was reset
Calls: itis_search_df ... <Anonymous> -> crul_fetch -> <Anonymous> -> raise_libcurl_error
Execution halted
Flavor: r-oldrel-windows-x86_64