Last updated on 2026-04-22 20:53:41 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| alakazam | 1 | 13 | |
| scoper | 1 | 13 | |
| shazam | 1 | 13 | |
| tigger | 1 | 1 | 12 |
Current CRAN status: ERROR: 1, OK: 13
Version: 1.4.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'AminoAcids-Vignette.Rmd' using rmarkdown
! Package pdftex.def Error: File `4e4705adb1ab755d38bf2bcfc2e6c738ff234c3f.pdf'
not found: using draft setting.
Error: processing vignette 'AminoAcids-Vignette.Rmd' failed with diagnostics:
LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/alakazam.Rcheck/vign_test/alakazam/vignettes/AminoAcids-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See AminoAcids-Vignette.log for more info.
--- failed re-building 'AminoAcids-Vignette.Rmd'
--- re-building 'Diversity-Vignette.Rmd' using rmarkdown
! Package pdftex.def Error: File `732de54ae3eddeaa4755e14139b9d978a0718532.pdf'
not found: using draft setting.
Error: processing vignette 'Diversity-Vignette.Rmd' failed with diagnostics:
LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/alakazam.Rcheck/vign_test/alakazam/vignettes/Diversity-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Diversity-Vignette.log for more info.
--- failed re-building 'Diversity-Vignette.Rmd'
--- re-building 'Fastq-Vignette.Rmd' using rmarkdown
! Package pdftex.def Error: File `6a2ee42702c7caeff37f1b27933fbfa0fc78510c.pdf'
not found: using draft setting.
Error: processing vignette 'Fastq-Vignette.Rmd' failed with diagnostics:
LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/alakazam.Rcheck/vign_test/alakazam/vignettes/Fastq-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Fastq-Vignette.log for more info.
--- failed re-building 'Fastq-Vignette.Rmd'
--- re-building 'Files-Vignette.Rmd' using rmarkdown
--- finished re-building 'Files-Vignette.Rmd'
--- re-building 'GeneUsage-Vignette.Rmd' using rmarkdown
! Package pdftex.def Error: File `2e2916f42a03e0296c0ae14d2606e1b0cb24892e.pdf'
not found: using draft setting.
Error: processing vignette 'GeneUsage-Vignette.Rmd' failed with diagnostics:
LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/alakazam.Rcheck/vign_test/alakazam/vignettes/GeneUsage-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See GeneUsage-Vignette.log for more info.
--- failed re-building 'GeneUsage-Vignette.Rmd'
SUMMARY: processing the following files failed:
'AminoAcids-Vignette.Rmd' 'Diversity-Vignette.Rmd'
'Fastq-Vignette.Rmd' 'GeneUsage-Vignette.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: ERROR: 1, OK: 13
Version: 1.4.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'Scoper-Vignette.Rmd' using rmarkdown
! Package pdftex.def Error: File `ec5b0748712471dc0ae5d44e855233646f855cac.pdf'
not found: using draft setting.
Error: processing vignette 'Scoper-Vignette.Rmd' failed with diagnostics:
LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/scoper.Rcheck/vign_test/scoper/vignettes/Scoper-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Scoper-Vignette.log for more info.
--- failed re-building 'Scoper-Vignette.Rmd'
SUMMARY: processing the following file failed:
'Scoper-Vignette.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: ERROR: 1, OK: 13
Version: 1.3.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'Baseline-Vignette.Rmd' using rmarkdown
! Package pdftex.def Error: File `b522230823bafc2e6438b9df3356437d4edd75e4.pdf'
not found: using draft setting.
Error: processing vignette 'Baseline-Vignette.Rmd' failed with diagnostics:
LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/shazam.Rcheck/vign_test/shazam/vignettes/Baseline-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Baseline-Vignette.log for more info.
--- failed re-building 'Baseline-Vignette.Rmd'
--- re-building 'DistToNearest-Vignette.Rmd' using rmarkdown
! Package pdftex.def Error: File `0975819364d7c61f35458800106856b04d087801.pdf'
not found: using draft setting.
Error: processing vignette 'DistToNearest-Vignette.Rmd' failed with diagnostics:
LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/shazam.Rcheck/vign_test/shazam/vignettes/DistToNearest-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See DistToNearest-Vignette.log for more info.
--- failed re-building 'DistToNearest-Vignette.Rmd'
--- re-building 'Mutation-Vignette.Rmd' using rmarkdown
! Package pdftex.def Error: File `3f81e2d8005a3decf410c78485aece186919fe97.pdf'
not found: using draft setting.
Error: processing vignette 'Mutation-Vignette.Rmd' failed with diagnostics:
LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/shazam.Rcheck/vign_test/shazam/vignettes/Mutation-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Mutation-Vignette.log for more info.
--- failed re-building 'Mutation-Vignette.Rmd'
--- re-building 'Shmulate-Vignette.Rmd' using rmarkdown
! Package pdftex.def Error: File `fecf05ed702b3eb01a5f9407ff84086834473d04.pdf'
not found: using draft setting.
Error: processing vignette 'Shmulate-Vignette.Rmd' failed with diagnostics:
LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/shazam.Rcheck/vign_test/shazam/vignettes/Shmulate-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Shmulate-Vignette.log for more info.
--- failed re-building 'Shmulate-Vignette.Rmd'
--- re-building 'Targeting-Vignette.Rmd' using rmarkdown
! Package pdftex.def Error: File `03bffa254f7cd5747c4261004ee78dbc930e561a.pdf'
not found: using draft setting.
Error: processing vignette 'Targeting-Vignette.Rmd' failed with diagnostics:
LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/shazam.Rcheck/vign_test/shazam/vignettes/Targeting-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Targeting-Vignette.log for more info.
--- failed re-building 'Targeting-Vignette.Rmd'
SUMMARY: processing the following files failed:
'Baseline-Vignette.Rmd' 'DistToNearest-Vignette.Rmd'
'Mutation-Vignette.Rmd' 'Shmulate-Vignette.Rmd'
'Targeting-Vignette.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: ERROR: 1, NOTE: 1, OK: 12
Version: 1.1.3
Check: installed package size
Result: NOTE
installed size is 5.1Mb
sub-directories of 1Mb or more:
data 4.6Mb
Flavor: r-oldrel-macos-x86_64
Version: 1.1.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'Tigger-Vignette.Rmd' using rmarkdown
! Package pdftex.def Error: File `cd0af7101a3e4b5a42959926a88c62214d273fe8.pdf'
not found: using draft setting.
Error: processing vignette 'Tigger-Vignette.Rmd' failed with diagnostics:
LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/tigger.Rcheck/vign_test/tigger/vignettes/Tigger-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Tigger-Vignette.log for more info.
--- failed re-building 'Tigger-Vignette.Rmd'
SUMMARY: processing the following file failed:
'Tigger-Vignette.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-windows-x86_64