CRAN Package Check Results for Package refseqR

Last updated on 2025-07-30 05:48:48 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.5 13.87 123.53 137.40 OK
r-devel-linux-x86_64-debian-gcc 1.1.5 10.43 91.65 102.08 OK
r-devel-linux-x86_64-fedora-clang 1.1.5 212.04 OK
r-devel-linux-x86_64-fedora-gcc 1.1.5 215.81 OK
r-devel-windows-x86_64 1.1.5 15.00 162.00 177.00 OK
r-patched-linux-x86_64 1.1.5 14.00 116.76 130.76 OK
r-release-linux-x86_64 1.1.5 12.41 116.48 128.89 ERROR
r-release-macos-arm64 1.1.5 106.00 OK
r-release-macos-x86_64 1.1.5 177.00 OK
r-release-windows-x86_64 1.1.5 15.00 148.00 163.00 OK
r-oldrel-macos-arm64 1.1.5 118.00 OK
r-oldrel-macos-x86_64 1.1.5 130.00 OK
r-oldrel-windows-x86_64 1.1.5 19.00 173.00 192.00 OK

Check Details

Version: 1.1.5
Check: examples
Result: ERROR Running examples in ‘refseqR-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: refseq_CDScoords > ### Title: Extract the coding sequences (CDS) coordinates from a transcript > ### accession > ### Aliases: refseq_CDScoords > > ### ** Examples > > transcript = c("XM_004487701") > refseq_CDScoords(transcript) Error in refseq_CDScoords(transcript) : Exactly one CDS per file is expected. Contact the maintainer Execution halted Flavor: r-release-linux-x86_64

Version: 1.1.5
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘refseqR.Rmd’ using rmarkdown Quitting from refseqR.Rmd:109-111 [unnamed-chunk-10] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `refseq_CDScoords()`: ! Exactly one CDS per file is expected. Contact the maintainer --- Backtrace: ▆ 1. ├─base::substr(toString(refseq_CDSseq(transcript)), 1, 60) 2. ├─base::toString(refseq_CDSseq(transcript)) 3. └─refseqR::refseq_CDSseq(transcript) 4. └─refseqR::refseq_CDScoords(transcript) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'refseqR.Rmd' failed with diagnostics: Exactly one CDS per file is expected. Contact the maintainer --- failed re-building ‘refseqR.Rmd’ SUMMARY: processing the following file failed: ‘refseqR.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-release-linux-x86_64