Last updated on 2025-09-19 16:50:28 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.0 | 117.28 | 157.87 | 275.15 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.0 | 88.49 | 110.59 | 199.08 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.0 | 0.52 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.0 | 896.58 | WARN | |||
| r-devel-windows-x86_64 | 1.1.0 | 134.00 | 180.00 | 314.00 | OK | |
| r-patched-linux-x86_64 | 1.1.0 | 124.88 | 145.52 | 270.40 | OK | |
| r-release-linux-x86_64 | 1.1.0 | 129.69 | 145.85 | 275.54 | OK | |
| r-release-macos-arm64 | 1.1.0 | 116.00 | OK | |||
| r-release-macos-x86_64 | 1.1.0 | 185.00 | OK | |||
| r-release-windows-x86_64 | 1.1.0 | 138.00 | 177.00 | 315.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.0 | 109.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 1.1.0 | 130.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 1.1.0 | 164.00 | 234.00 | 398.00 | OK |
Version: 1.1.0
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
cor_phylo.cpp:76:14: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
cor_phylo.cpp:81:14: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
cor_phylo.cpp:89:14: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
See ‘/data/gannet/ripley/R/packages/tests-clang/phyr.Rcheck/00install.out’ for details.
* used C++ compiler: ‘clang version 21.1.1’
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.1.0
Check: dependencies in R code
Result: NOTE
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.1.0
Check: S3 generic/method consistency
Result: WARN
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.1.0
Check: replacement functions
Result: WARN
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
The argument of a replacement function which corresponds to the right
hand side must be named ‘value’.
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.1.0
Check: foreign function calls
Result: NOTE
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.1.0
Check: R code for possible problems
Result: ERROR
Incorrect (un)loading of package shared object.
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
The system-specific extension for shared objects must not be added.
See ?library.dynam.
[112s/166s] NOTE
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Found the following possibly unsafe calls:
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
See section ‘Good practice’ in ‘?data’.
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.1.0
Check: for missing documentation entries
Result: WARN
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.1.0
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
cor_phylo.cpp:76:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
cor_phylo.cpp:81:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
cor_phylo.cpp:89:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
See ‘/data/gannet/ripley/R/packages/tests-devel/phyr.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.1.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘INLA’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.1.0
Check: installed package size
Result: NOTE
installed size is 12.1Mb
sub-directories of 1Mb or more:
doc 2.0Mb
libs 9.6Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64