Last updated on 2026-01-10 03:51:02 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.3 | 4.54 | 150.86 | 155.40 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.3 | 3.81 | 114.14 | 117.95 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.3 | 9.00 | 243.79 | 252.79 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.1.3 | 8.00 | 267.50 | 275.50 | OK | |
| r-devel-windows-x86_64 | 1.1.3 | 10.00 | 208.00 | 218.00 | OK | |
| r-patched-linux-x86_64 | 1.1.3 | 5.84 | 141.60 | 147.44 | OK | |
| r-release-linux-x86_64 | 1.1.3 | 4.89 | 141.87 | 146.76 | OK | |
| r-release-macos-arm64 | 1.1.3 | 1.00 | 43.00 | 44.00 | ERROR | |
| r-release-macos-x86_64 | 1.1.3 | 4.00 | 179.00 | 183.00 | OK | |
| r-release-windows-x86_64 | 1.1.3 | 8.00 | 200.00 | 208.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.3 | 1.00 | 51.00 | 52.00 | OK | |
| r-oldrel-macos-x86_64 | 1.1.3 | 4.00 | 205.00 | 209.00 | OK | |
| r-oldrel-windows-x86_64 | 1.1.3 | 10.00 | 256.00 | 266.00 | OK |
Version: 1.1.3
Check: examples
Result: ERROR
Running examples in ‘logitr-Ex.R’ failed
The error most likely occurred in:
> ### Name: logitr
> ### Title: The main function for estimating logit models
> ### Aliases: logitr
> ### Keywords: logit logitr mixed mnl mxl willingness-to-pay wtp
>
> ### ** Examples
>
> # For more detailed examples, visit
> # https://jhelvy.github.io/logitr/articles/
>
> library(logitr)
>
> # Estimate a MNL model in the Preference space
> mnl_pref <- logitr(
+ data = yogurt,
+ outcome = "choice",
+ obsID = "obsID",
+ pars = c("price", "feat", "brand")
+ )
Running model...
Done!
>
> # Estimate a MNL model in the WTP space, using a 5-run multistart
> mnl_wtp <- logitr(
+ data = yogurt,
+ outcome = "choice",
+ obsID = "obsID",
+ pars = c("feat", "brand"),
+ scalePar = "price",
+ numMultiStarts = 5
+ )
Running multistart...
Random starting point iterations: 5
Number of cores: 15
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 5)
An irrecoverable exception occurred. R is aborting now ...
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: 7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSEtryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
Traceback:
call <- sys.call(-4L)10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
1:
Traceback:
mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, 1: 12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
mi$logitFuncs$getMnlV(pars, d$X, d$scalePar) mi = mi, opts = mi$options)14: tryCatch(expr, error = function(e) { call <- conditionCall(e)
4: doTryCatch(return(expr), name, parentenv, handler) if (!is.null(call)) {
dcall <- deparse(call, nlines = 1L) 5: prefix <- paste("Error in", dcall, ": ") LONG <- 75LtryCatchOne(expr, names, parentenv, handlers[[1L]]) sm <- strsplit(conditionMessage(e), "\n")[[1L]] if (identical(call[[1L]], quote(doTryCatch))) w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L)
6: 2: eval_f(x0, ...)tryCatchList(expr, classes, parentenv, handlers)
if (is.na(w)) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w))
3: type = "b") 7: if (w > LONG) nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, prefix <- paste0(prefix, "\n ") mi = mi, opts = mi$options)
tryCatch({ w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], } result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, else prefix <- "Error : " mi = mi, opts = mi$options) msg <- paste0(prefix, conditionMessage(e), "\n") type = "b")}, error = function(e) { .Internal(seterrmessage(msg[1L]))}) if (!silent && isTRUE(getOption("show.error.messages"))) {
cat(msg, file = outFile) .Internal(printDeferredWarnings()) 4: if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) 8: }system.time({ invisible(structure(msg, class = "try-error", condition = e))doTryCatch(return(expr), name, parentenv, handler)})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList,
5: }tryCatchOne(expr, names, parentenv, handlers[[1L]]) invisible(structure(msg, class = "try-error", condition = e))})
15: runModel, mc.cores = numCores)))try(lapply(X = S, FUN = FUN, ...), silent = TRUE) model <- mi$model
24: runMultistart(modelInputs)
25: result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17:
} 6: tryCatchList(expr, classes, parentenv, handlers)})FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w,
classes)) tryInvokeRestart("muffleWarning"))logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", 7: "brand"), scalePar = "price", numMultiStarts = 5)tryCatch({
9: 21: FUN(X[[i]], ...) result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective,
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler) mi = mi, opts = mi$options)suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
}, error = function(e) {
12: 23: tryCatchOne(expr, names, parentenv, handlers[[1L]])suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
An irrecoverable exception occurred. R is aborting now ...
24: })
8: system.time({ model <- mi$modelrunMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 5)
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch)))
call <- sys.call(-4L)An irrecoverable exception occurred. R is aborting now ...
dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: 16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25:
14: tryCatch(expr, error = function(e) {logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 5)
An irrecoverable exception occurred. R is aborting now ...
call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 5)
An irrecoverable exception occurred. R is aborting now ...
Error in names(x) <- value :
'names' attribute [3] must be the same length as the vector [0]
Calls: logitr -> getMultistartSummary -> colnames<-
Execution halted
Flavor: r-release-macos-arm64
Version: 1.1.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘basic_usage.Rmd’ using rmarkdown
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("basic_usage.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "basic_usage", "UTF-8", "/Volumes/Temp/tmp/RtmphhtQkN/file57ff448bba2f.rds")
An irrecoverable exception occurred. R is aborting now ...
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf",
*** caught segfault ***
address 0x110, cause 'invalid permissions'
engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("basic_usage.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "basic_usage", "UTF-8", "/Volumes/Temp/tmp/RtmphhtQkN/file57ff448bba2f.rds")
An irrecoverable exception occurred. R is aborting now ...
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("basic_usage.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "basic_usage", "UTF-8", "/Volumes/Temp/tmp/RtmphhtQkN/file57ff448bba2f.rds")
An irrecoverable exception occurred. R is aborting now ...
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("basic_usage.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "basic_usage", "UTF-8", "/Volumes/Temp/tmp/RtmphhtQkN/file57ff448bba2f.rds")
An irrecoverable exception occurred. R is aborting now ...
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
*** caught segfault ***
13: address 0x110, cause 'invalid permissions'
tryCatchList(expr, classes, parentenv, handlers)
*** caught segfault ***
address 0x110, cause 'invalid permissions'
14: tryCatch(expr, error = function(e) {
*** caught segfault ***
address 0x110, cause 'invalid permissions'
call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) 5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective)52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...) model$iterations <- result$iterations
Traceback:
1: model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: 11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e)nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]]) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ")
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) LONG <- 75L
Traceback:
sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b")
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar) output <- find_vignette_product(name, by = "weave", engine = engine) if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L]))
1: if (!silent && isTRUE(getOption("show.error.messages"))) { 2:
mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)eval_f(x0, ...)
Traceback:
if (!have.makefile && vignette_is_tex(output)) { 5:
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, cat(msg, file = outFile) mi = mi, opts = mi$options)tryCatchOne(expr, names, parentenv, handlers[[1L]])
.Internal(printDeferredWarnings()) }
2: texi2pdf(file = output, clean = FALSE, quiet = quiet)
1: invisible(structure(msg, class = "try-error", condition = e))}) 4: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)eval_f(x0, ...)
2:
doTryCatch(return(expr), name, parentenv, handler) 6: output <- find_vignette_product(name, by = "texi2pdf", eval_f(x0, ...)15:
tryCatchList(expr, classes, parentenv, handlers) 3: engine = engine) }
3:
5: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 7: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
}, error = function(e) {
try(lapply(X = S, FUN = FUN, ...), silent = TRUE) 4: tryCatch({nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("basic_usage.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "basic_usage", "UTF-8", "/Volumes/Temp/tmp/RtmphhtQkN/file57ff448bba2f.rds")
An irrecoverable exception occurred. R is aborting now ...
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13:
mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: 6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, tryCatchOne(expr, names, parentenv, handlers[[1L]]) result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchList(expr, classes, parentenv, handlers)
16:
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, tryCatchOne(expr, names, parentenv, handlers[[1L]])13: tryCatchList(expr, classes, parentenv, handlers) mi = mi, opts = mi$options) runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
20: }, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
withCallingHandlers(expr, warning = function(w) if (inherits(w,
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) }29: type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd)
runModel, mc.cores = numCores)))14:
tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (on_message$silence) {24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
26: switch(on_error, continue = invokeRestart("eval_continue"), eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) 14: { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } if (identical(call[[1L]], quote(doTryCatch))) TRUE}, handlers)
33: invokeRestart("muffleMessage") stop = invokeRestart("eval_stop"), error = NULL)doWithOneRestart(return(expr), restart)tryCatch(expr, error = function(e) {
call <- conditionCall(e) } if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) 34: })withOneRestart(expr, restarts[[1L]]) call <- sys.call(-4L)}, warning = function (cnd) { dcall <- deparse(call, nlines = 1L)
30: eval(call)
call <- sys.call(-4L)31:
if (getOption("warn") >= 2 || getOption("warn") < 0) { prefix <- paste("Error in", dcall, ": ") return()eval(call) LONG <- 75L dcall <- deparse(call, nlines = 1L) sm <- strsplit(conditionMessage(e), "\n")[[1L]]
prefix <- paste("Error in", dcall, ": ")35: LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) 32: with_handlers({ for (expr in tle$exprs) { } w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], withRestartList(expr, restarts[-nr]) watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") ev <- withVisible(eval(expr, envir)) if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE
type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ")}, handlers) } else prefix <- "Error : " type = "b") msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L]))36: doWithOneRestart(return(expr), restart) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) watcher$push(cnd) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e)) if (w > LONG) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) prefix <- paste0(prefix, "\n ")})
watcher$push(cnd)15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
switch(on_error, continue = invokeRestart("eval_continue"), 16:
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]]) } stop = invokeRestart("eval_stop"), error = NULL)})sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18:
else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L]))38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
33: doWithOneRestart(return(expr), restart)
34: lapply(seq_len(cores), inner.do)41: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: 19:
withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
parallel::mclapply(miList, runModel, mc.cores = numCores)evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning,
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
38: keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2LwithRestartList(expr, restarts) if (!silent && isTRUE(getOption("show.error.messages"))) {
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) }21: 30: cat(msg, file = outFile)suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)) TRUE }, output_handler = knit_handlers(options$render, options))
22: }, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)withCallingHandlers(expr, message = function(c) if (inherits(c, eval(call)
40: .Internal(printDeferredWarnings())evaluate::evaluate(...) classes)) tryInvokeRestart("muffleMessage"))
41:
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, }
31: eval(call)
32: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, 42: invisible(structure(msg, class = "try-error", condition = e)) runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: }) keep_message = if (is.numeric(options$message)) TRUE else options$message, in_dir(input_dir(), expr) stop_on_error = if (is.numeric(options$error)) options$error else {logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", with_handlers({
"brand"), scalePar = "price", numMultiStarts = 10) for (expr in tle$exprs) {
15:
26: 43: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)in_input_dir(evaluate(code, envir = env, new_device = FALSE,
16: if (options$error && options$include) ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output()eval(expr, envir) keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, watcher$print_value(ev$value, ev$visible, envir)
27: eval(expr, envir)sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE)) } TRUE}, handlers)
0L
stop_on_error = if (is.numeric(options$error)) options$error else {
17: if (options$error && options$include) 33: else 2LFUN(X[[i]], ...)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) 18: doWithOneRestart(return(expr), restart){ watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) }, output_handler = knit_handlers(options$render, options))
lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
34: 42: }in_dir(input_dir(), expr)20: 0L if (on_message$silence) {withOneRestart(expr, restarts[[1L]])withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
else 2L43:
}, output_handler = knit_handlers(options$render, options)))in_input_dir(evaluate(code, envir = env, new_device = FALSE,
44: invokeRestart("muffleMessage")eng_r(options) keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, 35:
withRestartList(expr, restarts[-nr]) } keep_message = if (is.numeric(options$message)) TRUE else options$message, }, warning = function (cnd) 45:
stop_on_error = if (is.numeric(options$error)) options$error else {36: doWithOneRestart(return(expr), restart)
37: if (options$error && options$include) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return()block_exec(params) }withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]]) watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) 0L
38: withRestartList(expr, restarts)22:
else 2L watcher$push(cnd)withCallingHandlers(expr, message = function(c) if (inherits(c,
classes)) tryInvokeRestart("muffleMessage")) }, output_handler = knit_handlers(options$render, options)))39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output()
46: watcher$print_value(ev$value, ev$visible, envir)
call_block(x) }
if (on_warning$silence) {44: 47: invokeRestart("muffleWarning")23: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...) error = function(e) { }
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
if (progress && is.function(pb$interrupt)) suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", eng_r(options) "brand"), scalePar = "price", numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
}, error = function (cnd) 43: {28:
watcher$capture_plot_and_output()in_input_dir(evaluate(code, envir = env, new_device = FALSE, pb$interrupt()withVisible(eval(expr, envir))
cnd <- sanitize_call(cnd) keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: keep_message = if (is.numeric(options$message)) TRUE else options$message, if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) stop_on_error = if (is.numeric(options$error)) options$error else {45: if (options$error && options$include) eval(call) 0Lblock_exec(params) else 2L
}, output_handler = knit_handlers(options$render, options)))
29: 31: eval(call)
32: with_handlers({ for (expr in tle$exprs) {withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { }), list(rlang_trace_top_env = knit_global())) watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) {44: ev <- withVisible(eval(expr, envir)) return() }46: watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd)call_block(x)eng_r(options)
}, handlers)
50:
watcher$push(cnd)47: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
process_group(group) }
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), 33: 45: error = function(e) {doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: if (progress && is.function(pb$interrupt)) 54: pb$interrupt()doWithOneRestart(return(expr), restart) if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e)vweave_rmarkdown(...)
block_exec(params) })
37: if (on_warning$silence) {55:
46: call_block(x)
invokeRestart("muffleWarning") }}, error = function (cnd) engine$weave(file, quiet = quiet, encoding = enc){ watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
49: 47: 31: process_group(group)
56:
eval(call)with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), 48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]]) error = function(e) { if (progress && is.function(pb$interrupt)) doTryCatch(return(expr), name, parentenv, handler) error = function(e) { pb$interrupt()
if (progress && is.function(pb$interrupt))
if (is_R_CMD_build() || is_R_CMD_check()) 38: 32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } pb$interrupt() TRUEwithRestartList(expr, restarts) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
if (is_R_CMD_build() || is_R_CMD_check())
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir))}, handlers)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])50: error <<- format(e)xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), })
33: doWithOneRestart(return(expr), restart)
58: tryCatchList(expr, classes, parentenv, handlers) error = function(e) { watcher$capture_plot_and_output()34: if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) 49: watcher$print_value(ev$value, ev$visible, envir)
error <<- format(e) }59: }), list(rlang_trace_top_env = knit_global())), function(loc) {with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e)tryCatch({ TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, }), list(rlang_trace_top_env = knit_global())), function(loc) {withOneRestart(expr, restarts[[1L]])
setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), 35: setwd(wd) output_dir = getwd(), ...) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) stop_on_error = if (is.numeric(options$error)) options$error else {withRestartList(expr, restarts[-nr])
paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: 54: if (options$error && options$include)
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)vweave_rmarkdown(...) engine$weave(file, quiet = quiet, encoding = enc)
setwd(startdir)
0L38: else 2L }, output_handler = knit_handlers(options$render, options)))
44: output <- find_vignette_product(name, by = "weave", engine = engine)55: withRestartList(expr, restarts)eng_r(options)
39: engine$weave(file, quiet = quiet, encoding = enc) if (!have.makefile && vignette_is_tex(output)) {
53: 45: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
texi2pdf(file = output, clean = FALSE, quiet = quiet)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
56: withRestarts(with_handlers({58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) for (expr in tle$exprs) { output <- find_vignette_product(name, by = "texi2pdf", doTryCatch(return(expr), name, parentenv, handler) } engine = engine)block_exec(params) ev <- withVisible(eval(expr, envir))
}, error = function(e) { watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)57: }tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", }, error = function(e) {
59: 40:
tryCatch({ OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("basic_usage.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "basic_usage", "UTF-8", "/Volumes/Temp/tmp/RtmphhtQkN/file57ff448bba2f.rds")
An irrecoverable exception occurred. R is aborting now ...
engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { file, conditionMessage(e)))})
60: tools:::.buildOneVignette("basic_usage.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", evaluate::evaluate(...)46:
call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { texi2pdf(file = output, clean = FALSE, quiet = quiet)41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options) TRUE, FALSE, "basic_usage", "UTF-8", "/Volumes/Temp/tmp/RtmphhtQkN/file57ff448bba2f.rds")
An irrecoverable exception occurred. R is aborting now ...
if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) output <- find_vignette_product(name, by = "texi2pdf", error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("basic_usage.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr",
45: block_exec(params)
46: call_block(x)
47: error <<- format(e)process_group(group) TRUE, FALSE, "basic_usage", "UTF-8", "/Volumes/Temp/tmp/RtmphhtQkN/file57ff448bba2f.rds")
An irrecoverable exception occurred. R is aborting now ...
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }) setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) {51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e)53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
error = function(e) { if (progress && is.function(pb$interrupt)) 56: doTryCatch(return(expr), name, parentenv, handler)
57: pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("basic_usage.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "basic_usage", "UTF-8", "/Volumes/Temp/tmp/RtmphhtQkN/file57ff448bba2f.rds")59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("basic_usage.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr",
An irrecoverable exception occurred. R is aborting now ...
TRUE, FALSE, "basic_usage", "UTF-8", "/Volumes/Temp/tmp/RtmphhtQkN/file57ff448bba2f.rds")
An irrecoverable exception occurred. R is aborting now ...
Quitting from basic_usage.Rmd:82-91 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `names(x) <- value`:
! 'names' attribute [3] must be the same length as the vector [0]
---
Backtrace:
▆
1. └─logitr::logitr(...)
2. └─logitr:::getMultistartSummary(allModels)
3. └─base::`colnames<-`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'basic_usage.Rmd' failed with diagnostics:
'names' attribute [3] must be the same length as the vector [0]
--- failed re-building ‘basic_usage.Rmd’
--- re-building ‘benchmark.Rmd’ using rmarkdown
--- finished re-building ‘benchmark.Rmd’
--- re-building ‘convergence.Rmd’ using rmarkdown
--- finished re-building ‘convergence.Rmd’
--- re-building ‘data_formatting.Rmd’ using rmarkdown
--- finished re-building ‘data_formatting.Rmd’
--- re-building ‘interactions.Rmd’ using rmarkdown
--- finished re-building ‘interactions.Rmd’
--- re-building ‘mnl_models.Rmd’ using rmarkdown
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10, startVals = wtp_mnl_pref$Estimate)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54:
*** caught segfault ***
address 0x110, cause 'invalid permissions'
vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("mnl_models.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models", "UTF-8", "/Volumes/Temp/tmp/RtmphhtQkN/file57ff1f053c31.rds")
An irrecoverable exception occurred. R is aborting now ...
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10, startVals = wtp_mnl_pref$Estimate)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("mnl_models.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models", "UTF-8", "/Volumes/Temp/tmp/RtmphhtQkN/file57ff1f053c31.rds")
An irrecoverable exception occurred. R is aborting now ...
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10, startVals = wtp_mnl_pref$Estimate)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("mnl_models.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models", "UTF-8", "/Volumes/Temp/tmp/RtmphhtQkN/file57ff1f053c31.rds")
An irrecoverable exception occurred. R is aborting now ...
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10, startVals = wtp_mnl_pref$Estimate)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) {
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) {
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]]) watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"),
6: tryCatchList(expr, classes, parentenv, handlers)
stop = invokeRestart("eval_stop"), error = NULL)})
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)30: eval(call)
31: }, error = function(e) {})
8: system.time({ model <- mi$modeleval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) {
38: withRestartList(expr, restarts)
39: if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ")withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b")evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)) if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10, startVals = wtp_mnl_pref$Estimate)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage")
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet) }
}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])}, handlers)
33: doWithOneRestart(return(expr), restart)
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", tools:::.buildOneVignette("mnl_models.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models", "UTF-8", "/Volumes/Temp/tmp/RtmphhtQkN/file57ff1f053c31.rds") file, conditionMessage(e)))})
60: tools:::.buildOneVignette("mnl_models.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models", "UTF-8", "/Volumes/Temp/tmp/RtmphhtQkN/file57ff1f053c31.rds")
An irrecoverable exception occurred. R is aborting now ...
An irrecoverable exception occurred. R is aborting now ...
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2:
*** caught segfault ***
address 0x110, cause 'invalid permissions'
eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10, startVals = wtp_mnl_pref$Estimate)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("mnl_models.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models", "UTF-8", "/Volumes/Temp/tmp/RtmphhtQkN/file57ff1f053c31.rds")
An irrecoverable exception occurred. R is aborting now ...
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective,
Traceback:
1: mi = mi, opts = mi$options) }, error = function(e) {mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]]) }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL
*** caught segfault ***
address 0x110, cause 'invalid permissions'
tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
11: doTryCatch(return(expr), name, parentenv, handler)
12: 9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) {tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE)) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, 20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: classes)) tryInvokeRestart("muffleWarning"))suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10, startVals = wtp_mnl_pref$Estimate)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd)
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10, startVals = wtp_mnl_pref$Estimate)
26: { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return()eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output()
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
} 3: watcher$capture_plot_and_output()nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") } mi = mi, opts = mi$options)}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: if (on_message$capture) { watcher$push(cnd) }eval(call)
31: eval(call)
32:
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: if (on_message$silence) {with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) invokeRestart("muffleMessage") }}, warning = function (cnd) { } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd)withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: tryCatchList(expr, classes, parentenv, handlers)
Traceback:
} 1: if (on_warning$silence) { invokeRestart("muffleWarning") 7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
doWithOneRestart(return(expr), restart)mi$logitFuncs$getMnlV(pars, d$X, d$scalePar) 8: system.time({ model <- mi$model result <- NULL }
}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)37: tryCatch({withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]]) result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) {})
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4:
doTryCatch(return(expr), name, parentenv, handler)38: withRestartList(expr, restarts)
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) }
model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
model$status <- result$status39: withRestarts(with_handlers({ for (expr in tle$exprs) { model$message <- result$message } 5: ev <- withVisible(eval(expr, envir))tryCatchOne(expr, names, parentenv, handlers[[1L]])}) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir)35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
}37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else {38: withRestartList(expr, restarts)
if (options$error && options$include) 39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir))
6: 9: FUN(X[[i]], ...)
watcher$capture_plot_and_output()tryCatchList(expr, classes, parentenv, handlers) 0L else 2L
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
10: lapply(X = S, FUN = FUN, ...) 8: system.time({ }, output_handler = knit_handlers(options$render, options))
watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
model <- mi$model11: 40: evaluate::evaluate(...)
41: result <- NULL
doTryCatch(return(expr), name, parentenv, handler) tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning,
42: keep_message = if (is.numeric(options$message)) TRUE else options$message, in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, mi = mi, opts = mi$options)12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
stop_on_error = if (is.numeric(options$error)) options$error else {14: if (options$error && options$include) }, error = function(e) { 0L }) else 2LtryCatch(expr, error = function(e) { call <- conditionCall(e) }, output_handler = knit_handlers(options$render, options)) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L LONG <- 75L else 2L model$logLik <- as.numeric(-1 * result$objective) }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params) sm <- strsplit(conditionMessage(e), "\n")[[1L]]
w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w")42: in_dir(input_dir(), expr)
46: call_block(x)
47: process_group(group)
48: if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : "
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) model$iterations <- result$iterations 0L model$status <- result$status model$message <- result$message msg <- paste0(prefix, conditionMessage(e), "\n") else 2L } }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), .Internal(seterrmessage(msg[1L])) error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: if (!silent && isTRUE(getOption("show.error.messages"))) {}) cat(msg, file = outFile)
9: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), FUN(X[[i]], ...)
.Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))10: })
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: 45: lapply(X = S, FUN = FUN, ...)sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))block_exec(params)
error = function(e) {17:
11: 46: doTryCatch(return(expr), name, parentenv, handler)FUN(X[[i]], ...)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]]) if (progress && is.function(pb$interrupt)) pb$interrupt()call_block(x) if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
13:
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))47:
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: process_group(group)runMultistart(modelInputs)
tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w")48: if (is.na(w)) withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) type = "b")50: if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) }25: invisible(structure(msg, class = "try-error", condition = e)) })})
xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat",
error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { "brand"), scalePar = "price", numMultiStarts = 10, startVals = wtp_mnl_pref$Estimate)15: setwd(wd)try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16:
write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) 49: 26: eval(expr, envir) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), output_dir = getwd(), ...)
classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)) error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt))
pb$interrupt()
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
54: 27: vweave_rmarkdown(...) if (is_R_CMD_build() || is_R_CMD_check())
55: engine$weave(file, quiet = quiet, encoding = enc) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout())
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)eval(expr, envir)23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25:
paste0("\nQuitting from ", loc, if (!is.null(error)) logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10, startVals = wtp_mnl_pref$Estimate)
26: 59: paste0("\n", rule(), error, "\n", rule()))tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("mnl_models.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models", "UTF-8", "/Volumes/Temp/tmp/RtmphhtQkN/file57ff1f053c31.rds")
An irrecoverable exception occurred. R is aborting now ...
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) {}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc) watcher$capture_plot_and_output()
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine)eval(expr, envir)
27: eval(expr, envir) if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output()
cnd <- sanitize_call(cnd) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))28: })
60: tools:::.buildOneVignette("mnl_models.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models", "UTF-8", "/Volumes/Temp/tmp/RtmphhtQkN/file57ff1f053c31.rds")
watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), withVisible(eval(expr, envir))
stop = invokeRestart("eval_stop"), error = NULL)})
30: An irrecoverable exception occurred. R is aborting now ...
eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) }29: TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) {evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
for (expr in tle$exprs) {43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUEeng_r(options)}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46:
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e)call_block(x) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", 49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc) engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)60: tools:::.buildOneVignette("mnl_models.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models", "UTF-8", "/Volumes/Temp/tmp/RtmphhtQkN/file57ff1f053c31.rds")
An irrecoverable exception occurred. R is aborting now ...
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("mnl_models.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models", "UTF-8", "/Volumes/Temp/tmp/RtmphhtQkN/file57ff1f053c31.rds")
An irrecoverable exception occurred. R is aborting now ...
Quitting from mnl_models.Rmd:85-98 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `names(x) <- value`:
! 'names' attribute [3] must be the same length as the vector [0]
---
Backtrace:
▆
1. └─logitr::logitr(...)
2. └─logitr:::getMultistartSummary(allModels)
3. └─base::`colnames<-`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'mnl_models.Rmd' failed with diagnostics:
'names' attribute [3] must be the same length as the vector [0]
--- failed re-building ‘mnl_models.Rmd’
--- re-building ‘mnl_models_weighted.Rmd’ using rmarkdown
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = cars_us, outcome = "choice", obsID = "obsnum", pars = c("hev", "phev10", "phev20", "phev40", "bev75", "bev100", "bev150", "american", "japanese", "chinese", "skorean", "phevFastcharge", "bevFastcharge", "opCost", "accelTime"), scalePar = "price", robust = TRUE, numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
*** caught segfault ***
address 0x110, cause 'invalid permissions'
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("mnl_models_weighted.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models_weighted", "UTF-8", "/Volumes/Temp/tmp/RtmphhtQkN/file57ff4e58620d.rds")
An irrecoverable exception occurred. R is aborting now ...
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = cars_us, outcome = "choice", obsID = "obsnum", pars = c("hev", "phev10", "phev20", "phev40", "bev75", "bev100", "bev150", "american", "japanese", "chinese", "skorean", "phevFastcharge", "bevFastcharge", "opCost", "accelTime"), scalePar = "price", robust = TRUE, numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("mnl_models_weighted.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models_weighted", "UTF-8", "/Volumes/Temp/tmp/RtmphhtQkN/file57ff4e58620d.rds")
An irrecoverable exception occurred. R is aborting now ...
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
*** caught segfault ***
address 0x110, cause 'invalid permissions'
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = cars_us, outcome = "choice", obsID = "obsnum", pars = c("hev", "phev10", "phev20", "phev40", "bev75", "bev100", "bev150", "american", "japanese", "chinese", "skorean", "phevFastcharge", "bevFastcharge", "opCost", "accelTime"), scalePar = "price", robust = TRUE, numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("mnl_models_weighted.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models_weighted", "UTF-8", "/Volumes/Temp/tmp/RtmphhtQkN/file57ff4e58620d.rds")
An irrecoverable exception occurred. R is aborting now ...
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19:
*** caught segfault ***
address 0x110, cause 'invalid permissions'
parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = cars_us, outcome = "choice", obsID = "obsnum", pars = c("hev", "phev10", "phev20", "phev40", "bev75", "bev100", "bev150", "american", "japanese", "chinese", "skorean", "phevFastcharge", "bevFastcharge", "opCost", "accelTime"), scalePar = "price", robust = TRUE, numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("mnl_models_weighted.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models_weighted", "UTF-8", "/Volumes/Temp/tmp/RtmphhtQkN/file57ff4e58620d.rds")
An irrecoverable exception occurred. R is aborting now ...
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = cars_us, outcome = "choice", obsID = "obsnum", pars = c("hev", "phev10", "phev20", "phev40", "bev75", "bev100", "bev150", "american", "japanese", "chinese", "skorean", "phevFastcharge", "bevFastcharge", "opCost", "accelTime"), scalePar = "price", robust = TRUE, numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
*** caught segfault ***
address 0x110, cause 'invalid permissions'
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("mnl_models_weighted.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models_weighted", "UTF-8", "/Volumes/Temp/tmp/RtmphhtQkN/file57ff4e58620d.rds")
An irrecoverable exception occurred. R is aborting now ...
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
*** caught segfault ***
address 0x110, cause 'invalid permissions'
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = cars_us, outcome = "choice", obsID = "obsnum", pars = c("hev", "phev10", "phev20", "phev40", "bev75", "bev100", "bev150", "american", "japanese", "chinese", "skorean", "phevFastcharge", "bevFastcharge", "opCost", "accelTime"), scalePar = "price", robust = TRUE, numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("mnl_models_weighted.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models_weighted", "UTF-8", "/Volumes/Temp/tmp/RtmphhtQkN/file57ff4e58620d.rds")
An irrecoverable exception occurred. R is aborting now ...
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = cars_us, outcome = "choice", obsID = "obsnum", pars = c("hev", "phev10", "phev20", "phev40", "bev75", "bev100", "bev150", "american", "japanese", "chinese", "skorean", "phevFastcharge", "bevFastcharge", "opCost", "accelTime"), scalePar = "price", robust = TRUE, numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("mnl_models_weighted.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models_weighted", "UTF-8", "/Volumes/Temp/tmp/RtmphhtQkN/file57ff4e58620d.rds")
An irrecoverable exception occurred. R is aborting now ...
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
*** caught segfault ***
address 0x110, cause 'invalid permissions'
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = cars_us, outcome = "choice", obsID = "obsnum", pars = c("hev", "phev10", "phev20", "phev40", "bev75", "bev100", "bev150", "american", "japanese", "chinese", "skorean", "phevFastcharge", "bevFastcharge", "opCost", "accelTime"), scalePar = "price", robust = TRUE, numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("mnl_models_weighted.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models_weighted", "UTF-8", "/Volumes/Temp/tmp/RtmphhtQkN/file57ff4e58620d.rds")
An irrecoverable exception occurred. R is aborting now ...
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = cars_us, outcome = "choice", obsID = "obsnum", pars = c("hev", "phev10", "phev20", "phev40", "bev75", "bev100", "bev150", "american", "japanese", "chinese", "skorean", "phevFastcharge", "bevFastcharge", "opCost", "accelTime"), scalePar = "price", robust = TRUE, numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("mnl_models_weighted.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models_weighted", "UTF-8", "/Volumes/Temp/tmp/RtmphhtQkN/file57ff4e58620d.rds")
An irrecoverable exception occurred. R is aborting now ...
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = cars_us, outcome = "choice", obsID = "obsnum", pars = c("hev", "phev10", "phev20", "phev40", "bev75", "bev100", "bev150", "american", "japanese", "chinese", "skorean", "phevFastcharge", "bevFastcharge", "opCost", "accelTime"), scalePar = "price", robust = TRUE, numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("mnl_models_weighted.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "mnl_models_weighted", "UTF-8", "/Volumes/Temp/tmp/RtmphhtQkN/file57ff4e58620d.rds")
An irrecoverable exception occurred. R is aborting now ...
Quitting from mnl_models_weighted.Rmd:64-80 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `names(x) <- value`:
! 'names' attribute [3] must be the same length as the vector [0]
---
Backtrace:
▆
1. └─logitr::logitr(...)
2. └─logitr:::getMultistartSummary(allModels)
3. └─base::`colnames<-`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'mnl_models_weighted.Rmd' failed with diagnostics:
'names' attribute [3] must be the same length as the vector [0]
--- failed re-building ‘mnl_models_weighted.Rmd’
--- re-building ‘mxl_models.Rmd’ using rmarkdown
--- finished re-building ‘mxl_models.Rmd’
--- re-building ‘predict.Rmd’ using rmarkdown
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("predict.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "predict", "UTF-8", "/Volumes/Temp/tmp/RtmphhtQkN/file57ff420133a8.rds")
An irrecoverable exception occurred. R is aborting now ...
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("predict.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "predict", "UTF-8", "/Volumes/Temp/tmp/RtmphhtQkN/file57ff420133a8.rds")
An irrecoverable exception occurred. R is aborting now ...
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("predict.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "predict", "UTF-8", "/Volumes/Temp/tmp/RtmphhtQkN/file57ff420133a8.rds")
An irrecoverable exception occurred. R is aborting now ...
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("predict.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "predict", "UTF-8", "/Volumes/Temp/tmp/RtmphhtQkN/file57ff420133a8.rds")
An irrecoverable exception occurred. R is aborting now ...
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("predict.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "predict", "UTF-8", "/Volumes/Temp/tmp/RtmphhtQkN/file57ff420133a8.rds")
An irrecoverable exception occurred. R is aborting now ...
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({
*** caught segfault ***
address 0x110, cause 'invalid permissions'
for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
Traceback:
1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: 49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, 52: mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { })knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message }})
output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58:
Traceback:
1: tryCatchList(expr, classes, parentenv, handlers)mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
9: 59: 2: eval_f(x0, ...)
3: FUN(X[[i]], ...)tryCatch({
nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, 10: lapply(X = S, FUN = FUN, ...)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]]) engine$weave(file, quiet = quiet, encoding = enc)
13: tryCatchList(expr, classes, parentenv, handlers)
setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine)14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { mi = mi, opts = mi$options) if (identical(call[[1L]], quote(doTryCatch))) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L],
type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings())})
60: tools:::.buildOneVignette("predict.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "predict", "UTF-8", "/Volumes/Temp/tmp/RtmphhtQkN/file57ff420133a8.rds")
An irrecoverable exception occurred. R is aborting now ...
} invisible(structure(msg, class = "try-error", condition = e))}) 4: doTryCatch(return(expr), name, parentenv, handler)
Traceback:
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
15: 7: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)tryCatch({
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores) 1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)
2: eval_f(x0, ...)
3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})
8: system.time({ model <- mi$model result <- NULL tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) {
model$fail <- FALSE model$coefficients <- result$solution result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {20: })
8: withCallingHandlers(expr, warning = function(w) if (inherits(w, model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations model$status <- result$status model$message <- result$message classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
}system.time({}) model <- mi$model
result <- NULL22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage")) 9: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterationsFUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...)
23: model$status <- result$statussuppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25:
11: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
26: eval(expr, envir)doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: model$message <- result$message }})
9: FUN(X[[i]], ...)tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) {
10: lapply(X = S, FUN = FUN, ...)
11:
27: eval(expr, envir)
28: call <- conditionCall(e) if (!is.null(call)) {withVisible(eval(expr, envir))doTryCatch(return(expr), name, parentenv, handler) if (identical(call[[1L]], quote(doTryCatch)))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w")
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) tryCatch(expr, error = function(e) { prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) {{ watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() cat(msg, file = outFile) .Internal(printDeferredWarnings()) } } call <- conditionCall(e) if (!is.null(call)) { watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
invisible(structure(msg, class = "try-error", condition = e)) if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], })30: eval(call)
type = "b")31: eval(call) if (w > LONG) prefix <- paste0(prefix, "\n ")
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
}32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: 17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage")) else prefix <- "Error : "
23: suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))) msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings())
24: runMultistart(modelInputs)
25: withOneRestart(expr, restarts[[1L]])logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat",
"brand"), scalePar = "price", numMultiStarts = 10)35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37:
26: eval(expr, envir)
27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]]) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19:
parallel::mclapply(miList, runModel, mc.cores = numCores){ watcher$capture_plot_and_output()38: if (on_message$capture) { watcher$push(cnd) }withRestartList(expr, restarts)
if (on_message$silence) { invokeRestart("muffleMessage")20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) }
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
}}, warning = function (cnd) {22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
23: TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
41: 24: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", 42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) stop_on_error = if (is.numeric(options$error)) options$error else { "brand"), scalePar = "price", numMultiStarts = 10) watcher$push(cnd)
26: if (options$error && options$include) } if (on_warning$silence) { invokeRestart("muffleWarning")eval(expr, envir) }}, error = function (cnd) { 0L else 2L }, output_handler = knit_handlers(options$render, options))) watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)
*** caught segfault ***
address 0x110, cause 'invalid permissions'
27: 44: })eng_r(options)eval(expr, envir)
45: block_exec(params)
46: 28: 30: withVisible(eval(expr, envir))eval(call)
29: withCallingHandlers(code, error = function (e) call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) rlang::entrace(e), message = function (cnd)
{ watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) {31: eval(call)
invokeRestart("muffleMessage")32: error <<- format(e)with_handlers({ } })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), }, warning = function (cnd) error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())){
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { if (getOption("warn") >= 2 || getOption("warn") < 0) { setwd(wd) return() for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]]) write_utf8(res, output %n% stdout())
paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc) }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd)35: watcher$push(cnd)withRestartList(expr, restarts[-nr]) switch(on_error, continue = invokeRestart("eval_continue"),
36: doWithOneRestart(return(expr), restart)
37:
withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: 51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: withRestartList(expr, restarts)rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(),
Traceback:
output_dir = getwd(), ...)
stop = invokeRestart("eval_stop"), error = NULL)
39: 1: mi$logitFuncs$getMnlV(pars, d$X, d$scalePar)})54: withRestarts(with_handlers({
vweave_rmarkdown(...) for (expr in tle$exprs) {30: ev <- withVisible(eval(expr, envir))eval(call)
watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE
31: eval(call)
2: eval_f(x0, ...)}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45:
block_exec(params)
46: 3: nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, 32: 55: engine$weave(file, quiet = quiet, encoding = enc) mi = mi, opts = mi$options)with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) }
TRUEcall_block(x)56:
doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])47: }, handlers)process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() 4:
doTryCatch(return(expr), name, parentenv, handler)
if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) 5:
58: 33: tryCatchOne(expr, names, parentenv, handlers[[1L]])tryCatchList(expr, classes, parentenv, handlers)doWithOneRestart(return(expr), restart)
}), list(rlang_trace_top_env = knit_global()))
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options)}, error = function(e) {})34:
withOneRestart(expr, restarts[[1L]]) 8:
35: withRestartList(expr, restarts[-nr])50:
36: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), system.time({ error = function(e) {59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) model <- mi$model if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) result <- NULLdoWithOneRestart(return(expr), restart) paste0("\nQuitting from ", loc, if (!is.null(error)) tryCatch({ result <- nloptr::nloptr(x0 = mi$model$startVals, eval_f = mi$evalFuncs$objective, mi = mi, opts = mi$options) }, error = function(e) { }) if (!is.null(result)) { model$fail <- FALSE model$coefficients <- result$solution paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
model$logLik <- as.numeric(-1 * result$objective) model$iterations <- result$iterations52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...) output <- find_vignette_product(name, by = "weave", engine = engine) model$status <- result$status model$message <- result$message }})
9: FUN(X[[i]], ...)
10: lapply(X = S, FUN = FUN, ...) if (!have.makefile && vignette_is_tex(output)) {
texi2pdf(file = output, clean = FALSE, quiet = quiet)54:
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
11: vweave_rmarkdown(...)39: doTryCatch(return(expr), name, parentenv, handler)
withRestarts(with_handlers({55:
12: engine$weave(file, quiet = quiet, encoding = enc)
tryCatchOne(expr, names, parentenv, handlers[[1L]])
for (expr in tle$exprs) {13: ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)56: output <- find_vignette_product(name, by = "texi2pdf", engine = engine)doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchList(expr, classes, parentenv, handlers)40: }tryCatchOne(expr, names, parentenv, handlers[[1L]])
}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
evaluate::evaluate(...)60:
tools:::.buildOneVignette("predict.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "predict", "UTF-8", "/Volumes/Temp/tmp/RtmphhtQkN/file57ff420133a8.rds")
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else {14: if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
An irrecoverable exception occurred. R is aborting now ...
43: tryCatch(expr, error = function(e) {58: call <- conditionCall(e)tryCatchList(expr, classes, parentenv, handlers) if (!is.null(call)) {
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) {in_input_dir(evaluate(code, envir = env, new_device = FALSE, OK <<- FALSE keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))}) error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") error <<- format(e) LONG <- 75L }), list(rlang_trace_top_env = knit_global())), function(loc) { sm <- strsplit(conditionMessage(e), "\n")[[1L]] setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w")
if (is.na(w)) 52: w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b")60: tools:::.buildOneVignette("predict.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "predict", "UTF-8", "/Volumes/Temp/tmp/RtmphhtQkN/file57ff420133a8.rds")
if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n")An irrecoverable exception occurred. R is aborting now ...
.Internal(seterrmessage(msg[1L]))knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
15: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
16: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
17: FUN(X[[i]], ...)
18: lapply(seq_len(cores), inner.do)
19: parallel::mclapply(miList, runModel, mc.cores = numCores)
20: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
21: suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores))
22: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
vweave_rmarkdown(...)23:
55: engine$weave(file, quiet = quiet, encoding = enc)suppressMessages(suppressWarnings(parallel::mclapply(miList, runModel, mc.cores = numCores)))
24: runMultistart(modelInputs)
25: logitr(data = yogurt, outcome = "choice", obsID = "obsID", pars = c("feat", "brand"), scalePar = "price", numMultiStarts = 10)
26: eval(expr, envir)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: 27: eval(expr, envir)
28: withVisible(eval(expr, envir))
29: tools:::.buildOneVignette("predict.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "predict", "UTF-8", "/Volumes/Temp/tmp/RtmphhtQkN/file57ff420133a8.rds")
An irrecoverable exception occurred. R is aborting now ...
withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
30: eval(call)
31: eval(call)
32: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
33: doWithOneRestart(return(expr), restart)
34: withOneRestart(expr, restarts[[1L]])
35: withRestartList(expr, restarts[-nr])
36: doWithOneRestart(return(expr), restart)
37: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
38: withRestartList(expr, restarts)
39: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
40: evaluate::evaluate(...)
41: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
42: in_dir(input_dir(), expr)
43: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
44: eng_r(options)
45: block_exec(params)
46: call_block(x)
47: process_group(group)
48: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
49: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
50: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
51: process_file(text, output)
52: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
53: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
54: vweave_rmarkdown(...)
55: engine$weave(file, quiet = quiet, encoding = enc)
56: doTryCatch(return(expr), name, parentenv, handler)
57: tryCatchOne(expr, names, parentenv, handlers[[1L]])
58: tryCatchList(expr, classes, parentenv, handlers)
59: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
60: tools:::.buildOneVignette("predict.Rmd", "/Volumes/Builds/packages/big-sur-arm64/results/4.5/logitr.Rcheck/vign_test/logitr", TRUE, FALSE, "predict", "UTF-8", "/Volumes/Temp/tmp/RtmphhtQkN/file57ff420133a8.rds")
An irrecoverable exception occurred. R is aborting now ...
Quitting from predict.Rmd:91-109 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `names(x) <- value`:
! 'names' attribute [3] must be the same length as the vector [0]
---
Backtrace:
▆
1. └─logitr::logitr(...)
2. └─logitr:::getMultistartSummary(allModels)
3. └─base::`colnames<-`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'predict.Rmd' failed with diagnostics:
'names' attribute [3] must be the same length as the vector [0]
--- failed re-building ‘predict.Rmd’
--- re-building ‘summarizing_results.Rmd’ using rmarkdown
--- finished re-building ‘summarizing_results.Rmd’
--- re-building ‘utility_models.Rmd’ using rmarkdown
--- finished re-building ‘utility_models.Rmd’
SUMMARY: processing the following files failed:
‘basic_usage.Rmd’ ‘mnl_models.Rmd’ ‘mnl_models_weighted.Rmd’
‘predict.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-arm64