CRAN Package Check Results for Package jSDM

Last updated on 2025-09-20 00:50:09 CEST.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	0.2.6	703.11	268.67	971.78	NOTE
r-devel-linux-x86_64-debian-gcc	0.2.6	444.49	178.91	623.40	WARN
r-devel-linux-x86_64-fedora-clang	0.2.6			1653.51	WARN
r-devel-linux-x86_64-fedora-gcc	0.2.6			1836.51	WARN
r-devel-windows-x86_64	0.2.6	758.00	385.00	1143.00	NOTE
r-patched-linux-x86_64	0.2.6	694.31	256.05	950.36	NOTE
r-release-linux-x86_64	0.2.6	697.04	254.32	951.36	NOTE
r-release-macos-arm64	0.2.6			396.00	NOTE
r-release-macos-x86_64	0.2.6			492.00	NOTE
r-release-windows-x86_64	0.2.6	761.00	386.00	1147.00	NOTE
r-oldrel-macos-arm64	0.2.6			377.00	NOTE
r-oldrel-macos-x86_64	0.2.6			417.00	NOTE
r-oldrel-windows-x86_64	0.2.6	910.00	471.00	1381.00	NOTE

Check Details

Version: 0.2.6
Check: Rd files
Result: NOTE checkRd: (-1) jSDM_binomial_probit_long_format.Rd:45: Lost braces 45 | \code{species} \tab numeric or character eqn{n_{obs}}{n_obs}-length vector indicating the species observed, \cr | ^ checkRd: (-1) jSDM_binomial_probit_long_format.Rd:45: Lost braces; missing escapes or markup? 45 | \code{species} \tab numeric or character eqn{n_{obs}}{n_obs}-length vector indicating the species observed, \cr | ^ checkRd: (-1) jSDM_binomial_probit_long_format.Rd:45: Lost braces 45 | \code{species} \tab numeric or character eqn{n_{obs}}{n_obs}-length vector indicating the species observed, \cr | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 0.2.6
Check: whether package can be installed
Result: WARN Found the following significant warnings: Rcpp_jSDM_useful.cpp:85:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations] Rcpp_jSDM_useful.cpp:120:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations] Rcpp_jSDM_useful.cpp:154:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations] Rcpp_jSDM_useful.cpp:220:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations] Rcpp_jSDM_useful.cpp:257:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations] Rcpp_jSDM_useful.cpp:292:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations] Rcpp_jSDM_useful.cpp:326:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations] Rcpp_jSDM_useful.cpp:392:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations] See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/jSDM.Rcheck/00install.out’ for details. * used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.2.6
Check: whether package can be installed
Result: WARN Found the following significant warnings: Rcpp_jSDM_useful.cpp:85:14: warning: 'is_finite<arma::Mat<double>>' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations] Rcpp_jSDM_useful.cpp:120:14: warning: 'is_finite<arma::Mat<double>>' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations] Rcpp_jSDM_useful.cpp:154:14: warning: 'is_finite<arma::Mat<double>>' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations] Rcpp_jSDM_useful.cpp:220:14: warning: 'is_finite<arma::Mat<double>>' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations] Rcpp_jSDM_useful.cpp:257:14: warning: 'is_finite<arma::Mat<double>>' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations] Rcpp_jSDM_useful.cpp:292:14: warning: 'is_finite<arma::Mat<double>>' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations] Rcpp_jSDM_useful.cpp:326:14: warning: 'is_finite<arma::Mat<double>>' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations] Rcpp_jSDM_useful.cpp:392:14: warning: 'is_finite<arma::Mat<double>>' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations] See ‘/data/gannet/ripley/R/packages/tests-clang/jSDM.Rcheck/00install.out’ for details. * used C++ compiler: ‘clang version 21.1.1’ Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.2.6
Check: whether package can be installed
Result: WARN Found the following significant warnings: Rcpp_jSDM_useful.cpp:85:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations] Rcpp_jSDM_useful.cpp:120:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations] Rcpp_jSDM_useful.cpp:154:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations] Rcpp_jSDM_useful.cpp:220:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations] Rcpp_jSDM_useful.cpp:257:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations] Rcpp_jSDM_useful.cpp:292:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations] Rcpp_jSDM_useful.cpp:326:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations] Rcpp_jSDM_useful.cpp:392:23: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations] See ‘/data/gannet/ripley/R/packages/tests-devel/jSDM.Rcheck/00install.out’ for details. * used C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’ Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.2.6
Check: installed package size
Result: NOTE installed size is 34.2Mb sub-directories of 1Mb or more: libs 32.8Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64