Last updated on 2026-04-18 12:50:51 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.1 | 19.15 | 486.88 | 506.03 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.1 | 13.80 | 394.21 | 408.01 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.1 | 32.00 | 553.41 | 585.41 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.1.1 | 33.00 | 843.47 | 876.47 | OK | |
| r-devel-macos-arm64 | 0.1.1 | 5.00 | 106.00 | 111.00 | OK | |
| r-devel-windows-x86_64 | 0.1.1 | 25.00 | 246.00 | 271.00 | ERROR | |
| r-patched-linux-x86_64 | 0.1.1 | 17.75 | 537.68 | 555.43 | OK | |
| r-release-linux-x86_64 | 0.1.1 | 18.94 | 520.68 | 539.62 | OK | |
| r-release-macos-arm64 | 0.1.1 | OK | ||||
| r-release-macos-x86_64 | 0.1.1 | 12.00 | 250.00 | 262.00 | OK | |
| r-release-windows-x86_64 | 0.1.1 | 23.00 | 752.00 | 775.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.1 | OK | ||||
| r-oldrel-macos-x86_64 | 0.1.1 | 12.00 | 242.00 | 254.00 | OK | |
| r-oldrel-windows-x86_64 | 0.1.1 | 30.00 | 551.00 | 581.00 | OK |
Version: 0.1.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'hbsaems-betalogitnorm-model.Rmd' using rmarkdown
--- finished re-building 'hbsaems-betalogitnorm-model.Rmd'
--- re-building 'hbsaems-binlogitnorm-model.Rmd' using rmarkdown
--- finished re-building 'hbsaems-binlogitnorm-model.Rmd'
--- re-building 'hbsaems-handle-missing.Rmd' using rmarkdown
--- finished re-building 'hbsaems-handle-missing.Rmd'
--- re-building 'hbsaems-lnln-model.Rmd' using rmarkdown
--- finished re-building 'hbsaems-lnln-model.Rmd'
--- re-building 'hbsaems-modelling.Rmd' using rmarkdown
specified C++17
make cmd is
make -f "D:/RCompile/recent/R/etc/x64/Makeconf" -f "D:/RCompile/recent/R/share/make/winshlib.mk" CXX='$(CXX17) $(CXX17STD)' CXXFLAGS='$(CXX17FLAGS)' CXXPICFLAGS='$(CXX17PICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX17LDFLAGS)' SHLIB_LD='$(SHLIB_CXX17LD)' SHLIB="file1904c649311c8.dll" WIN=64 TCLBIN= OBJECTS="file1904c649311c8.o"
make would use
make[1]: Entering directory '/d/temp/2026_04_17_01_50_00_1722/RtmpkLtQBr'
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/" -I"D:/temp/2026_04_17_01_50_00_1722/RtmpuYWjwP/RLIBS_2de8346954d6/RcppEigen/include/" -I"D:/temp/2026_04_17_01_50_00_1722/RtmpuYWjwP/RLIBS_2de8346954d6/RcppEigen/include/unsupported" -I"D:/temp/2026_04_17_01_50_00_1722/RtmpuYWjwP/RLIBS_2de8346954d6/BH/include" -I"D:/RCompile/CRANpkg/lib/4.6/StanHeaders/include/src/" -I"D:/RCompile/CRANpkg/lib/4.6/StanHeaders/include/" -I"D:/RCompile/CRANpkg/lib/4.6/RcppParallel/include/" -DRCPP_PARALLEL_USE_TBB=1 -I"D:/RCompile/CRANpkg/lib/4.6/rstan/include" -DEIGEN_NO_DEBUG -DBOOST_DISABLE_ASSERTS -DBOOST_PENDING_INTEGER_LOG2_HPP -DSTAN_THREADS -DUSE_STANC3 -DSTRICT_R_HEADERS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -include "D:/RCompile/CRANpkg/lib/4.6/StanHeaders/include/stan/math/prim/fun/Eigen.hpp" -std=c++1y -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c file1904c649311c8.cpp -o file1904c649311c8.o
if test "zfile1904c649311c8.o" != "z"; then \
if test -e "file1904c649311c8-win.def"; then \
echo g++ -shared -s -static-libgcc -o file1904c649311c8.dll file1904c649311c8-win.def file1904c649311c8.o "D:/RCompile/CRANpkg/lib/4.6/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.6/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.6/RcppParallel/lib/x64" -ltbb -L"D:/RCompile/CRANpkg/lib/4.6/RcppParallel/libs/x64" -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.6/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R/bin/x64" -lR ; \
g++ -shared -s -static-libgcc -o file1904c649311c8.dll file1904c649311c8-win.def file1904c649311c8.o "D:/RCompile/CRANpkg/lib/4.6/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.6/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.6/RcppParallel/lib/x64" -ltbb -L"D:/RCompile/CRANpkg/lib/4.6/RcppParallel/libs/x64" -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.6/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R/bin/x64" -lR ; \
else \
echo EXPORTS > tmp.def; \
nm file1904c649311c8.o | sed -n 's/^.* [BCDRT] / /p' | sed -e '/[.]refptr[.]/d' -e '/[.]weak[.]/d' | sed 's/[^ ][^ ]*/"&"/g' >> tmp.def; \
echo g++ -shared -s -static-libgcc -o file1904c649311c8.dll tmp.def file1904c649311c8.o "D:/RCompile/CRANpkg/lib/4.6/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.6/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.6/RcppParallel/lib/x64" -ltbb -L"D:/RCompile/CRANpkg/lib/4.6/RcppParallel/libs/x64" -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.6/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R/bin/x64" -lR ; \
g++ -shared -s -static-libgcc -o file1904c649311c8.dll tmp.def file1904c649311c8.o "D:/RCompile/CRANpkg/lib/4.6/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.6/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.6/RcppParallel/lib/x64" -ltbb -L"D:/RCompile/CRANpkg/lib/4.6/RcppParallel/libs/x64" -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.6/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R/bin/x64" -lR ; \
rm -f tmp.def; \
fi \
fi
make[1]: Leaving directory '/d/temp/2026_04_17_01_50_00_1722/RtmpkLtQBr'
Quitting from hbsaems-modelling.Rmd:81-97 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `sink()`:
! invalid connection
---
Backtrace:
▆
1. └─hbsaems::hbm(...)
2. └─brms::brm(...)
3. └─brms::do_call(compile_model, compile_args)
4. └─brms:::eval2(call, envir = args, enclos = envir)
5. └─base::eval(expr, envir, ...)
6. └─base::eval(expr, envir, ...)
7. └─brms (local) .fun(...)
8. └─brms (local) .compile_model(model, ...)
9. ├─brms:::eval_silent(...)
10. │ └─base::eval(expr, envir)
11. │ └─base::eval(expr, envir)
12. └─brms::do_call(rstan::stan_model, args)
13. └─brms:::eval2(call, envir = args, enclos = envir)
14. └─base::eval(expr, envir, ...)
15. └─base::eval(expr, envir, ...)
16. └─rstan (local) .fun(model_code = .x1)
17. └─rstan:::cxxfunctionplus(...)
18. └─base::sink(type = "output")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'hbsaems-modelling.Rmd' failed with diagnostics:
invalid connection
--- failed re-building 'hbsaems-modelling.Rmd'
--- re-building 'hbsaems-run_sae_app.Rmd' using rmarkdown
--- finished re-building 'hbsaems-run_sae_app.Rmd'
--- re-building 'hbsaems-spatial.Rmd' using rmarkdown
--- finished re-building 'hbsaems-spatial.Rmd'
SUMMARY: processing the following file failed:
'hbsaems-modelling.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-windows-x86_64