Last updated on 2025-07-29 04:50:54 CEST.
| Package | FAIL | ERROR | NOTE | OK |
|---|---|---|---|---|
| colorhcplot | 13 | |||
| easyPubMed | 1 | 1 | 2 | 9 |
| mutSignatures | 2 | 11 | ||
| TCGAretriever | 2 | 11 |
Current CRAN status: OK: 13
Current CRAN status: FAIL: 1, ERROR: 1, NOTE: 2, OK: 9
Version: 2.13
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Damiano Fantini <damiano.fantini@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Damiano",
family = "Fantini",
role = c("aut", "cre"),
email = "damiano.fantini@gmail.com")
as necessary.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 2.13
Check: re-building of vignette outputs
Result: FAIL
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
> ### Title: Trim and Format Address Information
> ### Aliases: trim_address
>
> ### ** Examples
>
> addr_string <- " 2 Dept of Urology, Feinberg School of Medicine,"
> addr_string <- paste(addr_string, "Chicago, US; Dept of Mol Bio as well...")
> print(addr_string)
[1] " 2 Dept of Urology, Feinberg School of Medicine, Chicago, US; Dept of Mol Bio as well..."
> print(trim_address(addr = addr_string))
[1] "Dept of Urology, Feinberg School of Medicine, Chicago, US"
>
>
>
>
> ### * <FOOTER>
> ###
> cleanEx()
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
Time elapsed: 1.58 1.05 489.81 NA NA
> grDevices::dev.off()
null device
1
> ###
> ### Local variables: ***
> ### mode: outline-minor ***
> ### outline-regexp: "\\(> \\)?### [*]+" ***
> ### End: ***
> quit('no')
======== End of example output (where/before crash/hang up occured ?) ========
Flavor: r-devel-windows-x86_64
Version: 2.13
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘getting_started_with_easyPubMed.Rmd’ using rmarkdown
Quitting from getting_started_with_easyPubMed.Rmd:214-233 [takes_some_time]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `if (expTot > as.integer(expTot)) ...`:
! argument is of length zero
---
Backtrace:
▆
1. └─easyPubMed::batch_pubmed_download(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'getting_started_with_easyPubMed.Rmd' failed with diagnostics:
argument is of length zero
--- failed re-building ‘getting_started_with_easyPubMed.Rmd’
SUMMARY: processing the following file failed:
‘getting_started_with_easyPubMed.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-linux-x86_64
Current CRAN status: NOTE: 2, OK: 11
Version: 2.1.1
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Damiano Fantini <damiano.fantini@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Damiano",
family = "Fantini",
role = c("aut", "cre"),
email = "damiano.fantini@gmail.com"),
person(given = "Vania",
family = "Vidimar",
role = "aut"),
person(given = c("Joshua", "J"),
family = "Meeks",
role = "aut"))
as necessary.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Current CRAN status: NOTE: 2, OK: 11
Version: 1.9.1
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Damiano Fantini <damiano.fantini@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Damiano",
family = "Fantini",
role = c("aut", "cre"),
email = "damiano.fantini@gmail.com")
as necessary.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc