CRAN Package Check Results for Package climatehealth

Last updated on 2026-03-31 20:55:38 CEST.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-gcc	1.0.0	12.36	213.51	225.87	OK
r-devel-linux-x86_64-fedora-clang	1.0.0	37.00	550.15	587.15	ERROR
r-devel-linux-x86_64-fedora-gcc	1.0.0	37.00	540.09	577.09	ERROR
r-devel-macos-arm64	1.0.0	4.00	124.00	128.00	OK
r-release-macos-arm64	1.0.0	4.00	77.00	81.00	OK
r-release-macos-x86_64	1.0.0	13.00	233.00	246.00	OK
r-release-windows-x86_64	1.0.0	31.00	316.00	347.00	OK
r-oldrel-macos-x86_64	1.0.0	13.00	197.00	210.00	NOTE

Check Details

Version: 1.0.0
Check: tests
Result: ERROR Running ‘testthat.R’ [5m/13m] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(patrick) > library(climatehealth) > > test_check("climatehealth") This is dlnm 2.4.10. For details: help(dlnm) and vignette('dlnmOverview'). OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead. OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set). OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead. OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set). *** inla.core.safe: The inla program failed, but will rerun in case better initial values may help. try=1/1 OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead. OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set). OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead. OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set). Saving _problems/test_diarrhea-121.R OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead. OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set). OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead. OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set). *** inla.core.safe: The inla program failed, but will rerun in case better initial values may help. try=1/1 OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead. OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set). OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead. OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set). Saving _problems/test_malaria-142.R | | | 0% | |=================================== | 50% | |======================================================================| 100% [ FAIL 2 | WARN 14 | SKIP 2 | PASS 2315 ] ══ Skipped tests (2) ═══════════════════════════════════════════════════════════ • On CRAN (2): 'test_wildfire.R:1943:3', 'test_wildfire.R:2020:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_diarrhea.R:83:3'): diarrhea_do_analysis runs end-to-end on synthetic data ── Error in `inla.core.safe(formula = formula, family = family, contrasts = contrasts, data = data, quantiles = quantiles, E = E, offset = offset, scale = scale, weights = weights, Ntrials = Ntrials, strata = strata, lp.scale = lp.scale, link.covariates = link.covariates, verbose = verbose, lincomb = lincomb, selection = selection, control.compute = control.compute, control.predictor = control.predictor, control.family = control.family, control.inla = control.inla, control.fixed = control.fixed, control.mode = control.mode, control.expert = control.expert, control.hazard = control.hazard, control.lincomb = control.lincomb, control.update = control.update, control.lp.scale = control.lp.scale, control.pardiso = control.pardiso, control.stiles = control.stiles, control.taucs = control.taucs, control.numa = control.numa, only.hyperparam = only.hyperparam, inla.call = inla.call, inla.arg = inla.arg, num.threads = num.threads, keep = keep, working.directory = working.directory, silent = silent, inla.mode = inla.mode, safe = FALSE, debug = debug, .parent.frame = .parent.frame)`: 16 simultaneous processes spawned The inla program failed and the maximum number of tries has been reached. Backtrace: ▆ 1. ├─climatehealth:::suppress_plot(...) at test_diarrhea.R:83:3 2. │ └─base::force(expr) at ./helper-utils.R:11:3 3. ├─base::suppressWarnings(...) 4. │ └─base::withCallingHandlers(...) 5. └─climatehealth::diarrhea_do_analysis(...) 6. └─climatehealth:::run_inla_models(...) 7. └─climatehealth (local) fit(base_formula) 8. ├─INLA::inla.rerun(...) 9. │ └─base::stopifnot(any(inherits(object, "inla"))) 10. └─INLA::inla(...) 11. └─INLA:::inla.core.safe(...) ── Error ('test_malaria.R:104:3'): malaria_do_analysis runs end-to-end on synthetic data ── Error in `inla.core.safe(formula = formula, family = family, contrasts = contrasts, data = data, quantiles = quantiles, E = E, offset = offset, scale = scale, weights = weights, Ntrials = Ntrials, strata = strata, lp.scale = lp.scale, link.covariates = link.covariates, verbose = verbose, lincomb = lincomb, selection = selection, control.compute = control.compute, control.predictor = control.predictor, control.family = control.family, control.inla = control.inla, control.fixed = control.fixed, control.mode = control.mode, control.expert = control.expert, control.hazard = control.hazard, control.lincomb = control.lincomb, control.update = control.update, control.lp.scale = control.lp.scale, control.pardiso = control.pardiso, control.stiles = control.stiles, control.taucs = control.taucs, control.numa = control.numa, only.hyperparam = only.hyperparam, inla.call = inla.call, inla.arg = inla.arg, num.threads = num.threads, keep = keep, working.directory = working.directory, silent = silent, inla.mode = inla.mode, safe = FALSE, debug = debug, .parent.frame = .parent.frame)`: 16 simultaneous processes spawned The inla program failed and the maximum number of tries has been reached. Backtrace: ▆ 1. ├─climatehealth:::suppress_plot(...) at test_malaria.R:104:3 2. │ └─base::force(expr) at ./helper-utils.R:11:3 3. ├─base::suppressWarnings(...) 4. │ └─base::withCallingHandlers(...) 5. └─climatehealth::malaria_do_analysis(...) 6. └─climatehealth:::run_inla_models(...) 7. └─climatehealth (local) fit(base_formula) 8. ├─INLA::inla.rerun(...) 9. │ └─base::stopifnot(any(inherits(object, "inla"))) 10. └─INLA::inla(...) 11. └─INLA:::inla.core.safe(...) [ FAIL 2 | WARN 14 | SKIP 2 | PASS 2315 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.0.0
Check: tests
Result: ERROR Running ‘testthat.R’ [294s/418s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(patrick) > library(climatehealth) > > test_check("climatehealth") This is dlnm 2.4.10. For details: help(dlnm) and vignette('dlnmOverview'). OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead. OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set). OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead. OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set). *** inla.core.safe: The inla program failed, but will rerun in case better initial values may help. try=1/1 OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead. OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set). OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead. OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set). Saving _problems/test_diarrhea-121.R OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead. OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set). OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead. OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set). *** inla.core.safe: The inla program failed, but will rerun in case better initial values may help. try=1/1 OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead. OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set). OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead. OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set). Saving _problems/test_malaria-142.R | | | 0% | |=================================== | 50% | |======================================================================| 100% [ FAIL 2 | WARN 14 | SKIP 2 | PASS 2315 ] ══ Skipped tests (2) ═══════════════════════════════════════════════════════════ • On CRAN (2): 'test_wildfire.R:1943:3', 'test_wildfire.R:2020:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_diarrhea.R:83:3'): diarrhea_do_analysis runs end-to-end on synthetic data ── Error in `inla.core.safe(formula = formula, family = family, contrasts = contrasts, data = data, quantiles = quantiles, E = E, offset = offset, scale = scale, weights = weights, Ntrials = Ntrials, strata = strata, lp.scale = lp.scale, link.covariates = link.covariates, verbose = verbose, lincomb = lincomb, selection = selection, control.compute = control.compute, control.predictor = control.predictor, control.family = control.family, control.inla = control.inla, control.fixed = control.fixed, control.mode = control.mode, control.expert = control.expert, control.hazard = control.hazard, control.lincomb = control.lincomb, control.update = control.update, control.lp.scale = control.lp.scale, control.pardiso = control.pardiso, control.stiles = control.stiles, control.taucs = control.taucs, control.numa = control.numa, only.hyperparam = only.hyperparam, inla.call = inla.call, inla.arg = inla.arg, num.threads = num.threads, keep = keep, working.directory = working.directory, silent = silent, inla.mode = inla.mode, safe = FALSE, debug = debug, .parent.frame = .parent.frame)`: 16 simultaneous processes spawned The inla program failed and the maximum number of tries has been reached. Backtrace: ▆ 1. ├─climatehealth:::suppress_plot(...) at test_diarrhea.R:83:3 2. │ └─base::force(expr) at ./helper-utils.R:11:3 3. ├─base::suppressWarnings(...) 4. │ └─base::withCallingHandlers(...) 5. └─climatehealth::diarrhea_do_analysis(...) 6. └─climatehealth:::run_inla_models(...) 7. └─climatehealth (local) fit(base_formula) 8. ├─INLA::inla.rerun(...) 9. │ └─base::stopifnot(any(inherits(object, "inla"))) 10. └─INLA::inla(...) 11. └─INLA:::inla.core.safe(...) ── Error ('test_malaria.R:104:3'): malaria_do_analysis runs end-to-end on synthetic data ── Error in `inla.core.safe(formula = formula, family = family, contrasts = contrasts, data = data, quantiles = quantiles, E = E, offset = offset, scale = scale, weights = weights, Ntrials = Ntrials, strata = strata, lp.scale = lp.scale, link.covariates = link.covariates, verbose = verbose, lincomb = lincomb, selection = selection, control.compute = control.compute, control.predictor = control.predictor, control.family = control.family, control.inla = control.inla, control.fixed = control.fixed, control.mode = control.mode, control.expert = control.expert, control.hazard = control.hazard, control.lincomb = control.lincomb, control.update = control.update, control.lp.scale = control.lp.scale, control.pardiso = control.pardiso, control.stiles = control.stiles, control.taucs = control.taucs, control.numa = control.numa, only.hyperparam = only.hyperparam, inla.call = inla.call, inla.arg = inla.arg, num.threads = num.threads, keep = keep, working.directory = working.directory, silent = silent, inla.mode = inla.mode, safe = FALSE, debug = debug, .parent.frame = .parent.frame)`: 16 simultaneous processes spawned The inla program failed and the maximum number of tries has been reached. Backtrace: ▆ 1. ├─climatehealth:::suppress_plot(...) at test_malaria.R:104:3 2. │ └─base::force(expr) at ./helper-utils.R:11:3 3. ├─base::suppressWarnings(...) 4. │ └─base::withCallingHandlers(...) 5. └─climatehealth::malaria_do_analysis(...) 6. └─climatehealth:::run_inla_models(...) 7. └─climatehealth (local) fit(base_formula) 8. ├─INLA::inla.rerun(...) 9. │ └─base::stopifnot(any(inherits(object, "inla"))) 10. └─INLA::inla(...) 11. └─INLA:::inla.core.safe(...) [ FAIL 2 | WARN 14 | SKIP 2 | PASS 2315 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.0.0
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘INLA’ Flavor: r-oldrel-macos-x86_64