6d33f76a216fb20e94d4bdc0ea87adf0 *DESCRIPTION
00623403a8589a53a71367a94a3de3d3 *LICENSE
2cf0cb5a328b24655bc3c6b9fbd37ad3 *NAMESPACE
d7d89b6a87a7a09ce32ce1f90daf3271 *NEWS.md
e44d2f63201e6ab95d9dfde891c6e52c *R/compilation.R
ba55743aca0084e7d0052789f5a72f25 *R/extensions.R
927ebdcf6df33fe3cb014ff2e4c29d2a *R/extract_parameters.R
464109e118e83f22c136a387692b2c5b *R/geometry.R
2b6be5a15dceee53090e9ab2d9562342 *R/interface.R
2dbe337a7d4390bd48f052eb60ee825f *R/msprime.R
055b2c50434554782acc09246e974170 *R/print.R
145bc5a74a9acfe7ebbea075b5c990e9 *R/shiny.R
ebdcebd5c93ed26e206dbe9d32ded15c *R/slendr-package.R
21df2ab0f8b24e058b6f7400d75a682a *R/slim.R
b579d10d9b0c4c658d4b4e0a8a6e38a6 *R/tree-sequences.R
bed20f0169c4110387d465c0584c5070 *R/tspop.R
482c0035672d117a75a29af04a8d2249 *R/utils.R
425ee0873d4f7c5673204a8ebd98b5fd *R/visualization.R
88e98ed5f2aeebce9bb20fd75407872c *R/zzz.R
adbbf874be21ea6ad72629009d5b9707 *README.md
76e123f5dcc8dee07678412adc0a2a84 *build/partial.rdb
80c4c8a5b30ea8ad88411a9eb7092843 *build/slendr-00build.log
5537d973f56dccc44306332d7fe8d9de *build/vignette.rds
3fa56e956f638e24a6b39060606e28d7 *inst/doc/vignette-00-installation.Rmd
b630de42cf5ac2a6c1cdda6a4b5ced9c *inst/doc/vignette-00-installation.html
bc5f020fd7d347ea916410b5ad7aa264 *inst/doc/vignette-01-tutorial.R
db613d7e263b91cd2d9661731d3b7a73 *inst/doc/vignette-01-tutorial.Rmd
45b434fcc38453959285d6ac3b5156cf *inst/doc/vignette-01-tutorial.html
5727eea653fd148cf509d6aab61d2e05 *inst/doc/vignette-02-grid-model.R
b49fef6c179f6655e39b31b4994a8eb5 *inst/doc/vignette-02-grid-model.Rmd
2462e3d9472f9fc2bf9796bd6f21fcf9 *inst/doc/vignette-02-grid-model.html
796ea3b75f393d6f4d2f2cf637b6a482 *inst/doc/vignette-03-interactions.R
c37452a7931d12ef7b6bc81b77e27bec *inst/doc/vignette-03-interactions.Rmd
0f72f74d5bf898f41671584eb25e3271 *inst/doc/vignette-03-interactions.html
8097ec7da8f9e6efe9e1f082af349096 *inst/doc/vignette-04-nonspatial-models.R
064d5e3a985f22abac1fd9250fa092c7 *inst/doc/vignette-04-nonspatial-models.Rmd
0583dd5c0e49e854b518fc663331470c *inst/doc/vignette-04-nonspatial-models.html
e76cf07907e3667cf38b7752757c106e *inst/doc/vignette-05-tree-sequences.R
4e2b95c771e28c15c4b85249305b5447 *inst/doc/vignette-05-tree-sequences.Rmd
711cecf1fa5045b78387a9cbb83ea1a3 *inst/doc/vignette-05-tree-sequences.html
60aa471d698700c1e2018898a757f8e1 *inst/doc/vignette-06-locations.R
6a153a90fb0aa1dc44fb6aea003f133d *inst/doc/vignette-06-locations.Rmd
90247aca8e0f118868b3bcb120a12c38 *inst/doc/vignette-06-locations.html
44b016107a268c51053865a7b2c8d714 *inst/doc/vignette-07-engines.R
e53b29ea4f9ceb1dcddba0b931724920 *inst/doc/vignette-07-engines.Rmd
3bb3dff2ba4ae3bc7d7db311bee53ba1 *inst/doc/vignette-07-engines.html
9b9a38774517be6ca3efca9db4195695 *inst/doc/vignette-08-nonslendr-tskit.R
d311a1b37c586e5193873f67027010db *inst/doc/vignette-08-nonslendr-tskit.Rmd
a37f784228bc0fc1eb2c0ec1f56c90b0 *inst/doc/vignette-08-nonslendr-tskit.html
a32a578af27cbf6b368e55835ed9f4f8 *inst/doc/vignette-10-tracts.R
5b0fd1204395c39d81edd7c1aa4fe2db *inst/doc/vignette-10-tracts.Rmd
28f9e859cf38e1633eaf3185d421c1d0 *inst/doc/vignette-10-tracts.html
461066a430be7e2c5dde76625a6ea2c3 *inst/doc/vignette-11-extensions.R
f712a654762e6e2573b49c436fb679b1 *inst/doc/vignette-11-extensions.Rmd
8ef107ba96f8d429a86f22d3de365bd3 *inst/doc/vignette-11-extensions.html
234ab9c3adec738a3cf21769958e0ee9 *inst/extdata/extension_introgression.txt
30ab053e36e123588ecb118843529f59 *inst/extdata/extension_purifying.txt
3674932b2fb03dadb4aa998fc06ad0f9 *inst/extdata/extension_sweep.txt
e7e676d84a0e0998e3cde1c2c47c23eb *inst/extdata/extension_trajectory.txt
7431cb897c2540cc6424548872655a10 *inst/extdata/extension_trajectory_params.txt
b6b5ba484e271f455029ce6f5b5427aa *inst/extdata/models/introgression/__pycache__/script.cpython-312.pyc
128dc26e118f8be7f16009c1b3afafc7 *inst/extdata/models/introgression/checksums.tsv
68b329da9893e34099c7d8ad5cb9c940 *inst/extdata/models/introgression/description.txt
e5aeeb730fd2f0a69491cbe27585d123 *inst/extdata/models/introgression/direction.txt
62f16b3e56de1ccc77fe9400764a12f6 *inst/extdata/models/introgression/geneflow.tsv
d5b4c7d9b06b60a7846c4529834c9812 *inst/extdata/models/introgression/generation_time.txt
ea3bfcd1afa4aeeaa32141e8883e1c82 *inst/extdata/models/introgression/length.txt
7b296c64e0154d9c7df143d0eb0b8fd3 *inst/extdata/models/introgression/orig_length.txt
f78e494683df4d4a693168c4c284579a *inst/extdata/models/introgression/populations.tsv
a7ca96dcc4b4f821fcd3f2a75640691a *inst/extdata/models/introgression/ranges.rds
6840419153e7b1d50d564be2c3b63143 *inst/extdata/models/introgression/script.py
39835a45af94576be92c55dfd552493a *inst/extdata/models/introgression/script.slim
d42bef79e664c4ddfb4be97319892185 *inst/extdata/models/introgression/time_units.txt
b230e396573bb0f47509e6ac2d4b6e21 *inst/extdata/models/introgression_msprime.trees
be114da4cd7292a84250fd919dec26b5 *inst/extdata/models/introgression_slim.trees
2a8a18561c238b50ba479b79931cc999 *inst/extdata/models/msprime.trees
3d670a5ef6a5ccd62238702d2522180f *inst/naturalearth/ne_110m_land.gpkg
8773e33de6218db12a4196a9ee89d889 *inst/pylib/pylib.py
42762a88fcd49e0576f4b275ef7b90ed *inst/scripts/__pycache__/script.cpython-311.pyc
c2d8b4e8c97bfe755408ff94fb72d475 *inst/scripts/__pycache__/script.cpython-312.pyc
1788f53e5408aa50ef4bea71dbe827e1 *inst/scripts/__pycache__/script.cpython-38.pyc
bcacfa72f2db63fd76caa3b2c3988b08 *inst/scripts/script.py
2ad8e05d2cf693151b9404b56f9afbb6 *inst/scripts/script.slim
80e2cffed38c1c531cce99e41d189e06 *man/animate_model.Rd
57fe81dd8fccf969bbc409fd8a3ae550 *man/area.Rd
ba02bb4345fa2bec5fdee8125932b63d *man/as.phylo.slendr_phylo.Rd
dd1bb54f1e17301d41924e4265bcf6b3 *man/check_dependencies.Rd
9fb67cc95987048241f45646d3fc3b4a *man/check_env.Rd
c1edddf39a4805190686b275572d6ce9 *man/clear_env.Rd
ee36dd0e56b016e901cc88b1a213e73f *man/compile_model.Rd
671d3bd5ad6b554c7765e186c0ffa16f *man/distance.Rd
e5987c7baf3f94a19b427c8258390b00 *man/examples/model_definition.R
ec5d254620e435067943959027b19565 *man/examples/spatial_functions.R
2e93ebb51a86ef09b5f75d1edce0a4a4 *man/expand_range.Rd
042e8bbfda55616d362d70b33cccdec2 *man/explore_model.Rd
d48ef8082a137bcbcbac59da25e09961 *man/extract_parameters.Rd
04abb64776c1de555108a5b8a3460e69 *man/gene_flow.Rd
148f6a8e4d9b085cb74d6971ff6beccc *man/get_python.Rd
c93ea8175416b081d0db9a25fe160f9c *man/init_env.Rd
bed4194f1af146281cd81a8811d7ec56 *man/join.Rd
2c07c3a9e965f28765a506a2ea99c508 *man/move.Rd
6bcef620820dcab4a123648561da2796 *man/msprime.Rd
0352e0ad9171d6d1703741f25f6c991f *man/overlap.Rd
72cf0f77e44ebe64c61c382c1e6fb51c *man/pipe.Rd
2a9f1eff2da39ab61f2a969cf58579b2 *man/plot_map.Rd
bef5b4939de13a8cdf6874896929129a *man/plot_model.Rd
0e167e06c24fe6ba74a06083b987c771 *man/population.Rd
592309a235317936649f542229772d3f *man/print.slendr_pop.Rd
0be1b7b1ce9055551d3a512968f1e78c *man/print.slendr_ts.Rd
984652035a1d41f0843b0cc657817253 *man/read_model.Rd
70123e70b4a625a4faa9445b01a9bf7f *man/region.Rd
a226c8d792be8cd6e1e00e99855bc38d *man/reproject.Rd
7365ed2999052a454f0ee66d30ec79d3 *man/resize.Rd
228e86121eaedbb3e0937f630beff5e3 *man/schedule_sampling.Rd
cbbd7faf066c3416388e9f06af21a089 *man/set_dispersal.Rd
4ded0be2bc23928b3d068370515e97d5 *man/set_range.Rd
ab320b01a447a636f70461c095d5cb69 *man/setup_env.Rd
c4f54522d828aa86d415415f984d9b14 *man/shrink_range.Rd
e0df93c7d67b80ecdf828b1c3ff6d8ac *man/slendr.Rd
78136977bc8b7a8ef40a7c40c6609f47 *man/slim.Rd
356cc522d5c7115cb248f90a1e398b64 *man/substitute_values.Rd
2c7ad9e3456ff6a881286d371da94f4d *man/subtract.Rd
308dae7c86542f8da365a537d73d28e7 *man/summary.slendr_nodes.Rd
8db6b83d668b4d11addf8c1fc2adea24 *man/ts_afs.Rd
b74f003a06ae11ff33323daed6fa5004 *man/ts_ancestors.Rd
3553680614808175eb7ae8d726416659 *man/ts_coalesced.Rd
d65345b54a8d60d5cb65f1af370dc58d *man/ts_descendants.Rd
6ab323793d5342c47bc0bd4598dfa10f *man/ts_divergence.Rd
f68c8d87b826718f481d63db89fcd38e *man/ts_diversity.Rd
0f48e5d221b7a560a07b92964024a12d *man/ts_draw.Rd
9b19874eb72c3ac0f9833fb62a3aacd0 *man/ts_edges.Rd
6fb4c4bf50b7b53b0ee15aa80ba5b00e *man/ts_eigenstrat.Rd
41eeac56ec9df58347b01efb3ea151a1 *man/ts_f4ratio.Rd
35a571c3d2c9a737bceda29825da0ddb *man/ts_fst.Rd
989db15ca08a0aeb34c6a0a0209d4d45 *man/ts_genotypes.Rd
a44f48548d49bdc592b58ab7adc15513 *man/ts_ibd.Rd
633441adcab5d32f363a24196147a3ff *man/ts_load.Rd
6cab30e3cb1e293c93e7b007a63d694e *man/ts_metadata.Rd
65a5b3702d570a77563b3fdd551f318b *man/ts_mutate.Rd
bd047190a806b1e90353b6a8e65767fe *man/ts_names.Rd
9542a13c601994168430bb064e5e83cc *man/ts_nodes.Rd
67bc61806a2fdd9c18c08e1dda2da322 *man/ts_phylo.Rd
0ffd9de32b8b796a870b16e28f789606 *man/ts_read.Rd
44d1fb39a93bbda72eec9e071c9c94d3 *man/ts_recapitate.Rd
f55a2c0deab78e6a0fee1f310622020f *man/ts_samples.Rd
a4a4ccaa12c14110020ddfe3fecc253e *man/ts_save.Rd
cabecfcc43ef8c0042b5aaffcf4bea00 *man/ts_segregating.Rd
e591973ae3769c1c244357792b7568ce *man/ts_simplify.Rd
28f0f7e40fa411a0039e149acf053e9e *man/ts_table.Rd
a43cbc380b1d983ab97e76e6fd7db324 *man/ts_tajima.Rd
3c6f8e723f3873f11bb940b6b0c3924d *man/ts_tracts.Rd
9bf31228beb920715705755f62f2870f *man/ts_tree.Rd
bf8fc5254b126ab0a4fbf94b882defb4 *man/ts_vcf.Rd
382ceaf1e95fa267667b7f5a52b49b51 *man/ts_write.Rd
04bbc5a0663d6a0f40054fcc08a1f779 *man/world.Rd
f2cf2849ea93272b824094fbfbab6d9c *tests/testthat.R
eaaffb55ad16fb03bf66b2fac78974ef *tests/testthat/afs_Darwin.tsv.gz
f2f63d72617e85ae88345a3f8b0829da *tests/testthat/afs_Linux.tsv.gz
248559f501d7f9d9083fd634fdab11c2 *tests/testthat/afs_Windows.tsv.gz
aeeab69a34b1f6415459b7535fe6333f *tests/testthat/distances.tsv.gz
101dd0972d67c1bd64bd516956dd9653 *tests/testthat/f4_Darwin.tsv.gz
ff81252a51a4c579a402e916d66cfc2b *tests/testthat/f4_Linux.tsv.gz
e4be3b279631e074f1150045f8428edc *tests/testthat/f4_Windows.tsv.gz
afea0979259f6f43ade9795c3c8f744b *tests/testthat/f4ratio_Darwin.tsv.gz
3866b0b3edddc46ebb2631da1f6170a1 *tests/testthat/f4ratio_Linux.tsv.gz
7f0836bd770ac285d52cccca087a676d *tests/testthat/f4ratio_Windows.tsv.gz
2900163b3ade38a3a8862103d0c99c5e *tests/testthat/helper-functions.R
df30de225a3b1bcbfe4c70268fc4fe0b *tests/testthat/manual_ts_nodes+edges+inds+pops+muts.py
2ebcb77914082ed7933dcd5fa9adf481 *tests/testthat/manual_ts_nodes+edges+inds+pops.py
aadcad437a3e0e1e8ba647e4c2e82b72 *tests/testthat/manual_ts_nodes+edges+inds.py
f2847d8fbfa150b43ee0ab9b0f7ee650 *tests/testthat/manual_ts_nodes+edges.py
fa0444535f794db732fe23f5f5498985 *tests/testthat/map.rds
5495f0a65cd9f48c0c0cdb92df6b7943 *tests/testthat/test-abstract-vs-real-landscapes.R
c7100ff1f3f7d29d582bbb9806105304 *tests/testthat/test-compilation.R
afd385a8eb1ca3023c305b3b6a72177d *tests/testthat/test-coordinate-conversions.R
1b9602fb45ca64a42707b35e46f6d037 *tests/testthat/test-deprecation.R
11cae8e809460ad1082c76517a19904c *tests/testthat/test-dynamics.R
ff0b95178f63fa12a1c26a41531d02a3 *tests/testthat/test-engines.R
78ac7f5032c728cfba168980530b04a4 *tests/testthat/test-extensions.R
9eefa7715822e1ab8f7860000a3fac58 *tests/testthat/test-future.R
54d53a67ba95d2cf21c8c1bdd842bd23 *tests/testthat/test-geneflow.R
a3a03ddc21a60bf6e0a30d1d184021c1 *tests/testthat/test-geometrical-operations.R
f6bc07e563b7f3e268da1374de67085b *tests/testthat/test-ibd-squashing.R
342445336939d63d9fd8e510997927f8 *tests/testthat/test-ibd.R
b1b9058cfb71dfa747b48a2fb43887a9 *tests/testthat/test-interaction-changes.R
d0058df71b76bc850a076d70a48f1c08 *tests/testthat/test-interactive-elements.R
14b2fca15bd057b566d334fde7fa5062 *tests/testthat/test-manual-ts.R
f5e4110668f4b2f5ffaf75c5345d6a81 *tests/testthat/test-msprime-geneflow.R
15f3122a2bfcd10fd8cd6625a0965eab *tests/testthat/test-msprime-metadata.R
df2f9a71c0b9931b781c4d6d26b9e595 *tests/testthat/test-msprime.R
79eb66454f5d8eece0b9e766a4e4e627 *tests/testthat/test-named-sampling.R
9c27f193cda3bc70ae1e246dc414d54d *tests/testthat/test-naturalearth.R
d90893eef5e82f7df0380b313ba0d0d5 *tests/testthat/test-nonserialized.R
8d7f60b92634880c761a23005835e48b *tests/testthat/test-population.R
b40d8e7ee0ce8c367fa10f0a63c8239e *tests/testthat/test-pure-msprime-vs-slendr.R
52f17569c67b8b9382066a8de80dcd34 *tests/testthat/test-pure-slim-vs-slendr.R
a8c0ec8b3ec2958540061577615b6634 *tests/testthat/test-resizes-locked.R
4a4920f7520a6d87e2d3c99421ada964 *tests/testthat/test-resizes.R
cd867b65100589661a6943338eff3f71 *tests/testthat/test-runners.R
123ca1b9d52335681e1a31e2dc2ee45c *tests/testthat/test-sampling.R
fb2025cd8d643f22e294034bd3f78309 *tests/testthat/test-serialization.R
88784179df89098d2dc43d973478d67b *tests/testthat/test-simulation-runs.R
19851d682f199e2deeb7f5ce5779261f *tests/testthat/test-time-direction.R
62d18acf48c72cf407d3baeca7f2bb9b *tests/testthat/test-trees.R
a64070fc9901fcb7bf922efc77528067 *tests/testthat/test-ts-ancestors-descendants.R
eecc16da21b5c5e0581b419a0f1c2ab8 *tests/testthat/test-ts-pure-nonspatial.R
4e02b57987f99df4da61e5144dcfc1ef *tests/testthat/test-ts-pure-spatial.R
761e37ec4cb9b007e01f6629cfce6d4b *tests/testthat/test-ts.R
659e1c7d5b3da7f2928f2ff843a2e16b *tests/testthat/test-tspop.R
217a222b816673e5fddd9d5bce12c633 *tests/testthat/test-utililites.R
2d422de0d53b87afbe42271fa1b393e4 *tests/testthat/test-vcf.R
24d3baa6aaabf017b7c5ce33b4ae692a *vignettes/images/demographic_models.jpg
efe1a13581c41af051c8f728ec1b71b2 *vignettes/images/f4_tree.jpg
7cce047c28c344e554f0aa8675919a29 *vignettes/images/geneflow_graph.jpg
af681484bcf3a1e9415d17201fadce32 *vignettes/images/haak_map.jpg
6cd6b548cd6546ddc397c0c97abefc4f *vignettes/images/original_ex4.png
cf8166e446c9469713b393e2ece7cf4a *vignettes/images/shiny_graph.jpg
1baf024f9ca57f6d651539189c657072 *vignettes/images/shiny_maps.jpg
3fa56e956f638e24a6b39060606e28d7 *vignettes/vignette-00-installation.Rmd
db613d7e263b91cd2d9661731d3b7a73 *vignettes/vignette-01-tutorial.Rmd
b49fef6c179f6655e39b31b4994a8eb5 *vignettes/vignette-02-grid-model.Rmd
c37452a7931d12ef7b6bc81b77e27bec *vignettes/vignette-03-interactions.Rmd
064d5e3a985f22abac1fd9250fa092c7 *vignettes/vignette-04-nonspatial-models.Rmd
4e2b95c771e28c15c4b85249305b5447 *vignettes/vignette-05-tree-sequences.Rmd
6a153a90fb0aa1dc44fb6aea003f133d *vignettes/vignette-06-locations.Rmd
e53b29ea4f9ceb1dcddba0b931724920 *vignettes/vignette-07-engines.Rmd
d311a1b37c586e5193873f67027010db *vignettes/vignette-08-nonslendr-tskit.Rmd
5b0fd1204395c39d81edd7c1aa4fe2db *vignettes/vignette-10-tracts.Rmd
f712a654762e6e2573b49c436fb679b1 *vignettes/vignette-11-extensions.Rmd
