87a297add9fe2ab9b901188e104a6561 *DESCRIPTION
3ac19edac3f648d2194651cb6894f769 *NAMESPACE
8cde07524b716ec388fa4d11acddfeee *NEWS
e1dce116b4df6c22e7b5cdb2bfd61e2b *R/BF_Rao_Blackwell.R
12635212343dbd1910914ec5bf4f2224 *R/BF_auxiliary.R
8c28970a0cefb1d23e4905d3bbb7e4d8 *R/BF_likelihoods.R
dff0a1571afde515135f6a98d7625666 *R/BF_marginalMPT.R
cc83862ef8c67ebbf74a2a1f8f2a3763 *R/BFslope.R
ad26435dabff9ff77fba3ef2f98f2635 *R/PPP.R
b373dbe00b31c47ca8d715d93d887d29 *R/RcppExports.R
37f706a9bc949b151c8fa357c463e7aa *R/T1perGroup.R
718719191f8f915e5131b0016d269392 *R/TreeBUGS-package.R
bea670158a52a336f7aea54ac542b07b *R/WAIC.R
6bacb9bf2e9ab7bbd398032d0bd29730 *R/arnold2013.R
6040f09bed883afb0dc1ddb40d5a59cf *R/betweenSubjects.R
9bd58ff119024a06759cd39a26c94ec4 *R/callingSampler.R
5beed6fdaa74b408457a0ad781249599 *R/checkFunctions.R
416ca919bc2eb213fd40d4fe2c1d984e *R/corSamples.R
0ae135f6eda1db38e63c980224ea9f73 *R/correlationBayes.R
7d8527f5a94fdffae49c4d6948d2def2 *R/correlationBayesMCMC.R
f115512253de6b13aadb167925bacce3 *R/covCorrelationString.R
138482d45be33c4142b7458f1e44268f *R/covDataRead.R
b62dcbd2e10b85cb34e339d9d20501d1 *R/covFactor.R
9ecd3e709c237d7203c93f48d20ea614 *R/covPredictorHandling.R
759795c2e9b0d3002865866111c42e71 *R/covariateHandling.R
505c450436f144b0784ae7648ceaf14d *R/extendMPT.R
34694fc77df1a742ce78c10c99ad4480 *R/fitBetaMPT.R
7720e6fc7dcd2c577f90994162793169 *R/fitBetaMPTcpp.R
27e20d893a18da338fed156c9936d56d *R/fitModel.R
4bfc5acd5bc394847901d9b64007d302 *R/fitModelCpp.R
c0a9d179fb350ed6ece6c57cbeb8b4ab *R/fitSimpleMPT.R
9f4c7a218163d5bd62d8f3f8075b65f6 *R/fitTraitMPT.R
c25948dd4628fceaadfe5fa394586943 *R/genDataBeta.R
289be9424339fefb2fd5bcf84b0c4dd7 *R/genDataCheck.R
384013e86a591022b5d1cffdd2e1d5ba *R/genDataMPT.R
510bbdeab52278c1cb035983dcd629a0 *R/genDataTrait.R
9cf74d1fcfaf7890b20ef0d9752e2f58 *R/getGroupMeans.R
b62caec5d3271057bea331f26aedf77c *R/getParam.R
9fd98ba1971bc7fe609dd771f70f691b *R/getSamples.R
7dfec64b1a2337b06cf504e65a858055 *R/input_functions.R
c3107e91ac34c3d30741a5ba45143ff5 *R/makeModelDescription.R
6134571b4221583042ae23276e178fe0 *R/parseEQN.R
5664f320b00e0be803730318fff76462 *R/parseRestrictions.R
6c539035cdc28ff16c274c25ce55fbef *R/plotConvergence.R
872fbdd127e300cb204a2e8206fe51ee *R/plotDistribution.R
0efbe600c2454c461136ce61e85e3d4e *R/plotFit.R
4bfbf99eedf60e1c227ec8a75d0db695 *R/plotFrequencies.R
9d32b7b1de33dfe66db825bdac56159d *R/plotParameters.R
44e177e3784ff75a8ff2069a0ee1ea28 *R/plotPrior.R
fc8c02267cfbfbd22b120d1718b33731 *R/plotPriorPost.R
15102a693466bb0db0169760224b336e *R/posteriorPredictive.R
82da9fd3e5d2f2dd2e9fea5bb578150d *R/printMPT.R
c344c63486731aeac48fa8b4cc22c23a *R/priorPredictive.R
61c702fac4960cf313af1a41e2bda951 *R/probitInverse.R
75a8a53e32c76d029015a77d4dc61611 *R/readEQN.R
645cd71f283353fe336d6bb9dae0eacf *R/renameBUGSoutput.R
6581dcbe93d808496363ffe382303a2b *R/sampleHyperprior.R
7617568f2ec9c8de71b0c31ad0a7f92b *R/summarizeMCMC.R
d40e1be8a7a3f9b85e19a445122fa87a *R/summarizeMPT.R
24a0c6dc92c9c774b57bc9ae1c8e6990 *R/testHetChi.R
6eec770c77e56a7eaf04319931840a9a *R/testHetPerm.R
8f09f2837863e6460d3a301aa1fd1bbc *R/thetaHandling.R
d98e04b490ea0e8d2e43ceeaff80ee00 *R/transformedParModelfile.R
9e9c171e79c671ddce62a07a01d647ad *R/transformedParPosthoc.R
2bd0aa3eef5695f766d01b46d847ebac *R/within_subject_EQN.R
ad21ade55e1b6e5357db1587ff50f5b8 *R/writeSummaryToFile.R
9d5d57306c989a862d29353812d857e7 *build/partial.rdb
9f916329c304c6fba9b25b0cc25671ae *build/vignette.rds
71355a4f936ee6d3f69e673fa73d4237 *data/arnold2013.RData
961c2d42a3a9c99445f07efdf547ffb8 *inst/CITATION
05e74db71d7fafbaacb957b1daa34dba *inst/MPTmodels/2htm.eqn
d9a6bed11ce4e4545fd0001882d8b950 *inst/MPTmodels/2htsm.eqn
c68dc54b1cbda575c4d8288f1bcabca8 *inst/MPTmodels/winbugs_zero_trick.jags
f4eb373bf0db31ac3a40806e734938d2 *inst/doc/Heck_2018_BRM.pdf
ac3fa030761c52a63ae1195498a032dd *inst/doc/Heck_2018_BRM.pdf.asis
283e3e65d9c080876dc5ec0cf924b23f *inst/doc/TreeBUGS_1_intro.R
d213cc86f248e54706275312b0a41caa *inst/doc/TreeBUGS_1_intro.Rmd
d9faf3d61aa78d1c0a1361e2c7295233 *inst/doc/TreeBUGS_1_intro.html
5df7c7549d914cf9e23fae3988401d32 *inst/doc/TreeBUGS_2_extended.R
82cb31abaf8978cd85f8d366179580f4 *inst/doc/TreeBUGS_2_extended.Rmd
53102c4dd27f6feb734bd540620a491b *inst/doc/TreeBUGS_2_extended.html
969603e0e04cc33a4543f601874ceea9 *man/BayesFactorMPT.Rd
365d938b22a30a8f4ebf0a7cdedf934d *man/BayesFactorSlope.Rd
167b730374dfc77f0c323acf83d2298d *man/PPP.Rd
76c9e89aa83141c4ba87d2a928314c05 *man/TreeBUGS-package.Rd
d0732504b1b3fc3b7b44d53ad427a4fd *man/WAIC.Rd
bf05ad0ca304a5787e74b3fe67762eaf *man/arnold2013.Rd
ac63a254bfb64f0ece5b8532281fec12 *man/betaMPT.Rd
a2af0d77b8fbb45b3d8e7cccf83a0d00 *man/betaMPTcpp.Rd
11795953464d12ebd0d8cfe34e773e3c *man/betweenSubjectMPT.Rd
8c282168b08d5b107978cdcdd76e2540 *man/correlationPosterior.Rd
5accb906b4b285acdf20459e0f4b1731 *man/extendMPT.Rd
91709228a9d5cd404adcfb517147c703 *man/figures/TreeBUGS.png
a8f451f95582c55e34c6ffbea1bfa47c *man/genBetaMPT.Rd
c93554749941285ac95eb1ffc95321f5 *man/genMPT.Rd
4164052e7627db0744e0825f8932874c *man/genTraitMPT.Rd
68270eb868eb6922e31ea03b428de777 *man/getGroupMeans.Rd
2978d58273cd5ca26714c6ff3558255a *man/getParam.Rd
cd1c2534cfd6195709a0499c59d41689 *man/getSamples.Rd
c4a4808f395eef4f74c4a72593a3cfd9 *man/marginalMPT.Rd
36bb96b46559f8c2f142d8dd11f275bf *man/plot.Rd
9f94bc363276fe57e15575e8293226c9 *man/plotDistribution.Rd
9c00a6f3c56c394dd26c21a913d88296 *man/plotFit.Rd
7d2f415f52c331856faa99bba7595471 *man/plotFreq.Rd
70d3cc77c326ce618270335b750bad10 *man/plotParam.Rd
3066bd93ea1e57f8673b8eeec888cf15 *man/plotPrior.Rd
ea960ebccc36c97b7c0e7cbadbf628fd *man/plotPriorPost.Rd
3b75a72997419afd34ab526dd5eb712a *man/posteriorPredictive.Rd
83712d2e23764fbfa67d8f8648a9e00a *man/priorPredictive.Rd
0fc4d89e4830214cff1b7ca7cfff255b *man/probitInverse.Rd
e7a15c7a46f266204dba435971b40a0b *man/readEQN.Rd
17af114ea44ca699360f9701ee4b0161 *man/simpleMPT.Rd
970fdae11cfeeb2414f217c904aca447 *man/summarizeMCMC.Rd
dfbf65aaf417c41d66973ba90b1522ba *man/summarizeMPT.Rd
198f8312df3cffacc1796428a47c3f7b *man/testHetChi.Rd
b9f7849096ed24d8ca7b067a09ed3303 *man/testHetPerm.Rd
85997e769716510383b13b0c27d8ce50 *man/traitMPT.Rd
fd0c70fbc82c1c364ced63294da74ca8 *man/transformedParameters.Rd
ddd64fbdaec5770ac4021fb3581523bb *man/withinSubjectEQN.Rd
2a6f9e9e044a78154d3cfda5936d6f48 *src/Makevars
3a214e4bac0fbfc890f786b98b7af501 *src/RcppExports.cpp
c101c2e38a168d67bf55ebe44c928a2b *src/betaMPT.cpp
36fb7d6cbcb3b4a848fb1b0586803b07 *src/init.c
40f621edf6bb105c089c3a8740426f59 *src/loglikMPT.cpp
3cd4ae2b745a244c81a09946f6d340fe *tests/testthat.R
bdc50a24c61bd0743d8376ce630568ed *tests/testthat/test_fitModelCpp.R
756d9235fad942fee34a529aaa49aa56 *tests/testthat/test_genMPT.R
149561be17cb0a3bd86c22002f6294cc *tests/testthat/test_readEQN.R
ac3fa030761c52a63ae1195498a032dd *vignettes/Heck_2018_BRM.pdf.asis
d213cc86f248e54706275312b0a41caa *vignettes/TreeBUGS_1_intro.Rmd
82cb31abaf8978cd85f8d366179580f4 *vignettes/TreeBUGS_2_extended.Rmd
