b88deb1993eebc6f1907244bf69e7867 *DESCRIPTION
a287ef9e3924d0860a4aff4c8956e946 *INSTALL
27c98a5e82e9bb2274fe685ba5f8e79a *NAMESPACE
44d58df325cd48b064d7d0cc8a5678e3 *NEWS
63e23e8d807699dcd5711793291c6c7b *R/SeqFeatR_GUI.R
b56d29b6bb3fc5d10e828116ff94d10f *R/assocpair.R
ffd781e6cc7a084ec71e839cc39825a3 *R/assocpairfeat.R
b650de40fdb0906ef9b0980747ec8346 *R/assocpoint.R
831bbe5e520eed68eac12064bcec92ca *R/assocpointhierarchical.R
8ba7338c5953613e1fd886413aa3196b *R/assocpointpair.R
6cb2494a1ab0649e886a02d94a0e805e *R/assoctuple.R
18ee941d648b4796c964e6464fa4f743 *R/comparewithancestral.R
65dcf7b9730d431c44b5b2089fc428c8 *R/foundereffectfinder.R
c5a63d1eef00f93ccdd725b3285f322b *R/getfreqs.R
814a2e18b37e31d4dd0380574443365a *R/orPlot.R
15265a2dafbf2837b6c5c3c9f95ccc79 *R/q-values.R
1121c063b88c38f24528e1f0d389eea8 *R/rewritetuple.R
4a96fd376a9f73d5d2710ea47d5f2916 *R/smallmanhattan.R
7f1c74092500f1895a263f4b3c920cc2 *R/tartan.R
60131169f24367f6f381b7376098ee5d *R/visualizepair.R
96e401b5559831910db62d81b6d5f656 *R/visualizepairfeat.R
565c4e08e54b0d1f31fb1e278a8ed723 *R/volcanoplot.R
621cdde3d7169fc0b66ccc19d1c664aa *build/vignette.rds
238a2cf45011258451cfa7585896038a *inst/CITATION
7ea099d23553df008903533ca97fcdf1 *inst/doc/SeqFeatR_tutorial.Rnw
1770030a6462f48f6bdc13b7ef5ab361 *inst/doc/SeqFeatR_tutorial.pdf
99cc6ea7c4db7a2d5db6670e3d4cc6fa *inst/extdata/Example_Consensus_aa.fasta
a0caf81f79a709afac8a5bc071227635 *inst/extdata/Example_Consensus_nt.fasta
ec8d7421e859db84f1d4d3f758020f5b *inst/extdata/Example_HLA_binding_motifs_aa.csv
64adc3599ef6aab4f5789107b0bc7391 *inst/extdata/Example_HLA_binding_motifs_nt.csv
dd18d0bafbb892c70befd7bd249f6df8 *inst/extdata/Example_aa.fasta
73fee40ab356d06378ec67835615ab98 *inst/extdata/Example_aa_for_cwa.fasta
9b315b8d74e837681126857379a8bd9e *inst/extdata/Example_epitopes_aa.csv
b12b0f966e203e9d73df3ed2e449ebd2 *inst/extdata/Example_epitopes_nt.csv
d9d0fcbbdb972bc030636a0812a458cb *inst/extdata/Example_model_for_bayes.txt
1612679a3e50e0e03528b24a7aab8205 *inst/extdata/Example_nt.fasta
200e0b31ae8536e2672cd380ba2e6fc2 *inst/extdata/Example_reference_aa.fasta
e054ec56c225ad1bbf6e2dff5fb1c97c *inst/extdata/Example_reference_nt.fasta
86eb2fbe247820c3fd4e12d7ae53c963 *inst/extdata/Example_tree.nh
5884e85d08ec92d5203d284a1495e8b4 *inst/extdata/assocpair_results.csv
0135a4fbe64665209a06da0c7121a94b *inst/extdata/assocpairfeat_results.csv
b3fc69e4cc4d5555f225f769e71a5548 *inst/extdata/assocpoint_results.csv
463eb92ea3429d3a8820a2a6ae4d6313 *inst/extdata/assocpoint_results_nt.csv
3f131e4b300c9f82a9c5e04b5668effb *inst/extdata/assoctuple_result.csv
fb3db7a21fbe026ab3e145aa00c904e2 *inst/extdata/config.cfg
3b93024ab68219acb33ef7c4ee59a409 *inst/extdata/shared_mutations_result_for_tartan.csv
59b62385467c97b71b48ecdb5f714985 *inst/extdata/tart_1.csv
1bba9de213b5e815a9ea1dbdbcb36d72 *inst/extdata/tart_2.csv
4f992fa3bf76491a71b5707df547605f *man/SeqFeatR_GUI.Rd
a287690bbf7f1698d909c9862e5a1e9f *man/assocpair.Rd
6cd7229dec387ce09bdc67f899b492f7 *man/assocpairfeat.Rd
74eaf0104b1c359847d805689ec51665 *man/assocpoint.Rd
d0389aca63222a3d4cdb67d75a12394e *man/assocpointhierarchical.Rd
0612ca3676f8ee19fd1159bc0ae1a3b3 *man/assocpointpair.Rd
303de7059ae2e5c10746df57092e54e3 *man/assoctuple.Rd
1f39f899a3a22df7abb4285a5821a0ce *man/comparewithancestral.Rd
11005c233f49574fb01f4d2f44d350ef *man/foundereffectfinder.Rd
e78436e3f1652388f2b4750fe04992d7 *man/getfreqs.Rd
8d1f8e2ecdab07f688ee02bb032cbd16 *man/orPlot.Rd
20ac1276292dd561f15b212362501dbd *man/q-values.Rd
89045ab933650f29ceb16ed26e70ae17 *man/rewritetuple.Rd
e08a23333e54e096df9723984bfef081 *man/smallmanhattan.Rd
4e3542fbe9d465837bb632c527173698 *man/tartan.Rd
38c1e734fd6e5f4ef402905e5274fbb3 *man/visualizepair.Rd
e85f27e5b4450a8f5acab7c1cd4e5b6b *man/visualizepairfeat.Rd
af0f775a0ed5995410c48f76312ec623 *man/volcanoplot.Rd
ff9ef425ffd7e354149fb94ac15ba246 *vignettes/Example_HLA_position.png
6a1a1faf51f7846b368be00fe74d43a4 *vignettes/OR_new.pdf
20db91d0dd83845680ba643a65941d93 *vignettes/OR_new.pdf_tex
7ea099d23553df008903533ca97fcdf1 *vignettes/SeqFeatR_tutorial.Rnw
4a295e83541bbfdcf54f0601bfe2980d *vignettes/log.pdf
a5fb6d78ce55fb938c682e788c6972f4 *vignettes/log.pdf_tex
d28d3ff02861edb0a1e2d056733feb74 *vignettes/phylo_ex.pdf
21ed32fe2f6f04320a5360ebcfd70278 *vignettes/phylo_ex.pdf_tex
bc8ee04cb8c8e10d44f7006815c136b5 *vignettes/phylo_ex.svg
54f324abca0883d2f593baba11cba17b *vignettes/screenshotHLA.png
8ef98d58fbec5a1427853a212d3ebaa2 *vignettes/tart.pdf
56cedc3fae1b353a08813d0cdec1bdb7 *vignettes/tart.pdf_tex
