13e336ede9a45183b226be5cdb65430f *DESCRIPTION
2f0185d05b897fc91a653aa2e2006579 *NAMESPACE
041347dd4b24ec90e671a1121ab5173f *R/LipidMS.R
32ed3fb0969210681514ffa919f12edc *R/LipidMSapp.R
0fe2f0d60a9be3b1d49eb6b1259b98c7 *R/additionalFunctions.R
9fb2b21a41cb536ec28d46c75d93cb17 *R/dataProcessing.R
32c873dd9e54b56170df9e3304bc1b4b *R/idFunctionsNeg.R
0c47e05d8b0769326aef2d1037346d09 *R/idFunctionsPos.R
e947e8fa5271e62339c178cf0879fbe5 *R/internal.R
ce852e25e83dfd9c3fd60266036ad9b6 *R/internalProcessing.R
d0de479a10f23d48734370f8988fde70 *R/internaldbs.R
7e5d2fe418dd504da1f7211d2e8d1ad9 *R/msbatchAnnotationFunctions.R
afc82c92d7d1a0443b254b5633e3b9b5 *R/subfunctionsIdentification.R
87f9dff62159bfa946327979d459e00b *README.md
41bf8e5c229b4d8ddbddc14f480866d1 *build/vignette.rds
e23154e53433f94b0266d8162f67cac2 *data/CEdb.rda
b07de3672dc7d87e17e5163dbaeb2f29 *data/acylcerdb.rda
ede07584a3d0dead6de15c2b4b1cd9fc *data/adductsTable.rda
0568a959abdf387d33434ccc6b43c8ff *data/baconjdb.rda
3357df0825258895c5139b3ba42c7f36 *data/badb.rda
bec3dce4539f65e5ecd5bf9d633bc384 *data/carnitinesdb.rda
c0d73d37f15475d04acc4f4bd8077e09 *data/cerPdb.rda
8a42e991a28a8fc94d7a2fa354cf4a5e *data/cerdb.rda
df411845916523e5694b8dd055c6b184 *data/cldb.rda
02a980ea93ab29b614bda3f0d14b7264 *data/confLevels.rda
6e94e4ee8f7046c8303c6763b473a426 *data/dgdb.rda
80b01bd847602dbb3efc11aeea175c91 *data/fadb.rda
bf8146f2ab052d1b0f910ad60a3bc443 *data/fahfadb.rda
4597d64641e9a315b051d7a092264218 *data/hfadb.rda
7a5dda8189cb621b80ae6612769c6c32 *data/lysopadb.rda
8fabf65ab3557cc11e1044a3cf26982f *data/lysopaodb.rda
913707e665449672ee61d078883b5d92 *data/lysopcdb.rda
50e2fab0a6a2ae0397a92049ed30d511 *data/lysopcodb.rda
0b4cb2fa5b526f4bcdc3be833bf7a550 *data/lysopcpdb.rda
860bae46096d799b0a1c7c8043e1a63b *data/lysopedb.rda
10a95de726795b633830794ab071adf9 *data/lysopeodb.rda
b8c2fd061ce4224f1044b24f69ea1a3d *data/lysopepdb.rda
ae4147f9ff84f08169ce2aed5aea2291 *data/lysopgdb.rda
02385c76817dfeb2aff4bbe35a59352e *data/lysopidb.rda
4d7f9e1eb585f32ebebdaa3c5b227667 *data/lysopsdb.rda
3fe5fc8899599101fb8410684834d4bb *data/mgdb.rda
e78c10e49111cb3be8b2f7a9698af92f *data/nlsphdb.rda
7beac9b39779769302fe6b0376b0e707 *data/padb.rda
d358a076cfd62b4a62c76c65f1ad6c46 *data/pcdb.rda
12df7f0dbea7760f91e6fa7ddaecf275 *data/pcodb.rda
27aeb68e31da58afb51511ae55b094c8 *data/pcpdb.rda
5341b91b113e12eb31bcd9ef83e79132 *data/pedb.rda
ff2d0769ebbfa44aa44bfa92ca58a589 *data/peodb.rda
d74b1fd14a4186f8482c093ba10cc296 *data/pepdb.rda
b23cf396bd5a189ada1e413e3c41cde3 *data/pgdb.rda
a64c1b1a917aa64504b88b4067269488 *data/pidb.rda
02d40d36fd8e727f70eff07de94b82fc *data/psdb.rda
6a138612320083e63866d82ef2417358 *data/smdb.rda
2a1f1a52ec91a41f60a104fb79f65877 *data/sphPdb.rda
67c9ba61966eac5987ceb1fcfda6e80d *data/sphdb.rda
d5ceb31d544b968e7cf01b91717be156 *data/tgdb.rda
e158f312335f41e49156dc9363635ddd *inst/LipidMSapp/server.R
87718811587c908718819e1b509753b3 *inst/LipidMSapp/ui.R
008e1aec892ada309b7b63baa94aa686 *inst/LipidMSapp/www/iconohorizontal.png
c27f4936e8500005d23a50c5edec1146 *inst/doc/vignette.R
1fa5b4a2811d97cb8ea1909f970d94b1 *inst/doc/vignette.Rmd
220a79abf1240673873b65052c84e932 *inst/doc/vignette.html
c8b8cdbf405637499d7d1bc3e2853c31 *man/CEdb.Rd
6515e941b0ab86dbc58cfbeb75027637 *man/LipidMSapp.Rd
0475ea115273484c5c522dd0b462a9bd *man/MassAcylCer.Rd
95da2901e71b0f3962d786a4006745c0 *man/MassCE.Rd
018360c7618ef3e8895ba9bc4c599c0a *man/MassCL.Rd
0e2c339e5ee1626082898b7b8a9011ec *man/MassCarnitines.Rd
7b53581a754e1838f1650170630b3c61 *man/MassCer.Rd
c2751a9c485f0b410e69042569c61b17 *man/MassCerP.Rd
a8bd297e6a05c7f19ad102fda86bcc88 *man/MassDG.Rd
7e70d14c86f49d8c30b5218bcdf09e00 *man/MassFA.Rd
bf547cb6fed0956e9f330087e10558f6 *man/MassFAHFA.Rd
58db4642576e6c5e71cbc826469bb8f6 *man/MassGlcCer.Rd
1b3845c389c269be343b108705b27224 *man/MassHFA.Rd
baf4a240d1f28704897c18460d3fa889 *man/MassLysoPA.Rd
289823bc033cb79886d22c8bae5da52e *man/MassLysoPAo.Rd
9a1f803b3ed386bea8f5899b77717eab *man/MassLysoPC.Rd
b75036f473d72541c301da8c1d3d99c6 *man/MassLysoPCo.Rd
227edb6f5a4761a4bc40a00110a7a035 *man/MassLysoPCp.Rd
c1eb0f3459d67dc4e694a942a3fc4899 *man/MassLysoPE.Rd
49d2cb6b3fb46b5e552509da39de7ae5 *man/MassLysoPEo.Rd
fab869f0b74f26e856cc582affef2853 *man/MassLysoPEp.Rd
a577a0bb08bbca038e1aa1775102bd7f *man/MassLysoPG.Rd
cf0c98067b8c9e1dfd0f1ac39b2d5b3e *man/MassLysoPI.Rd
a7a4b6a1d1194d9fcbed3d92dabf8073 *man/MassLysoPS.Rd
c04794d9ecfd8c307e9df52532878bb4 *man/MassMG.Rd
6070e7b8d6016c9fa5d39c366a1c0288 *man/MassPA.Rd
7542798de244f2e81576538a21e25cc6 *man/MassPC.Rd
b90799bb07d23dc59d611c3f547a3646 *man/MassPCo.Rd
f1fbb9b5e6197aa986b6f18760c070e1 *man/MassPCp.Rd
e301935ac1bd729653da904f43f9fa7d *man/MassPE.Rd
edae71bca000526096805806de102221 *man/MassPEo.Rd
28654e6b40610ba882f4132b39754272 *man/MassPEp.Rd
32ac1cdec359642e4b5347b536ab4972 *man/MassPG.Rd
7c3c66a2ff580e82aca858f9eba8cc65 *man/MassPI.Rd
f7ab6f55fa54b94e38d9203f57d2e4d3 *man/MassPIP.Rd
8b7165fd0055ab7272b5d6eea4c5b83e *man/MassPIP2.Rd
9ed33ab0cb12b5001dbfd0c045b1766b *man/MassPIP3.Rd
36baf1a05b77bc36818859a59117eaa0 *man/MassPS.Rd
7b4b1b326e5f30c46583941a47808fed *man/MassSM.Rd
30a2b151ad5bcf216042ac1e536a8bb9 *man/MassSph.Rd
d1d009185bab17fba9e520384d58b332 *man/MassSphP.Rd
0d4c703c513b14d39d2d31bc1cade8be *man/MassTG.Rd
28b9d3d827a105d9d5e04ca96bfe4310 *man/acylcerdb.Rd
a2841c506a120e908f5423f3ecc20f45 *man/adductsTable.Rd
2394d1e1083db2aa55d74ecf68747a32 *man/alignmsbatch.Rd
f7291f74d8a1de8a32ffdebb690cac26 *man/annotateIsotopes.Rd
c80813a1020456548ed298e044f34695 *man/annotatemsbatch.Rd
e105126dc64333b6bdf9e6d79bfa03d9 *man/assignDB.Rd
8eb724b46db157a092df270ec9ea45cf *man/baconjdb.Rd
3943b97d5cdec0491f924b4172b74de7 *man/badb.Rd
a9c7259c7ca3309a024f36278918f902 *man/batchdataProcessing.Rd
d4aef52985637b7e24ac3361f093fe96 *man/carnitinesdb.Rd
9b578fdeffbf6b082b51bb7d118eff12 *man/cbs.Rd
7b13ccf7ec54348869724444f129e549 *man/cerPdb.Rd
6fccae6944eebefb168cd8d6687bcb37 *man/cerdb.Rd
c80d0e140b0ec154027f8a10298fae4f *man/chainFrags.Rd
8b96e52de10e27ae494230e81912ff75 *man/chains.Rd
b5ee15f983c4b0e689c887af6fdac559 *man/checkClass.Rd
bc810a1b58064af22d7a59da8e8ea2c3 *man/checkIntRules.Rd
886d64cd268157d15e3cb31beccfc3c6 *man/checkIntensityRules.Rd
79aa8dffa1802981f46d24402c4365d5 *man/cldb.Rd
8d84916db7902596867a178d1cb2d3b2 *man/clust.Rd
c1aae5c21ced5731715f2a3ba681c8c8 *man/clustdist.Rd
f3d5a65d49f90eea9a5ad5dd440466eb *man/clustering.Rd
488b105acdc43f331b4b6166e599c9c4 *man/coelutingFrags.Rd
4466fe4fb325e134462a0d06c73af1fb *man/coelutionScore.Rd
48fbe6a07605567fcb148603382e872b *man/combineChains.Rd
d49be739c7c76a724ea265b84e126fdb *man/confLevels.Rd
beb59df7c97d8e366d3828c3ecb6de67 *man/createLipidDB.Rd
09e247a12d189ffce1abf2beab4d8e37 *man/crossAdducts.Rd
f575f65dfb49c0f998a2c73bd87a84b9 *man/crossTables.Rd
32f81f02dfbe99e2b6e895b3daa60ce6 *man/dataProcessing.Rd
d3e85d97de3428cd5c40eaba348e229c *man/dbFourChains.Rd
34f32ff22bf00b646fae19e8f0b73637 *man/dbOneChain.Rd
95ade672ed2cd50307538e9e9e878196 *man/dbSphingolipids.Rd
a6e54e87d6449920b611e02c938b9d69 *man/dbThreeChains.Rd
932f90485419f31e2fe8bdccb448006e *man/dbTwoChains.Rd
35b1f5af1ded81bc1819e4ef33f25277 *man/ddaFrags.Rd
663dba2f6ee3afe0e3077faf2ce87b23 *man/dgdb.Rd
31774c22cf1f8c5434b273b3cb7df5df *man/diffcb.Rd
0aeb070836aede4a3237073b8cbd225f *man/fadb.Rd
fa1eadf52275ae4feda1fcc7b339f463 *man/fahfadb.Rd
bfb462bc27f6d91aeb8b11582345c34e *man/fillpeaksmsbatch.Rd
4e8820d7708aaa931de3af04458e3165 *man/filtermsms.Rd
42d49b6a281287cc25a41470de8ae2e6 *man/filtrateAdducts.Rd
2e544ab183d80300a8795f48bcd058c7 *man/findCandidates.Rd
d00bb17084a8694b8bfcbc7a13a60b68 *man/findMS2precursor.Rd
a1efc71102ba98f84f054834240b3859 *man/findPrecursor.Rd
ae848849e879d2ce1ec26cc3f3ff37aa *man/frags.Rd
710838458c3958dc9d07b241f3748d07 *man/getFormula.Rd
57232b5928ee8f9370aaa1b0de6cf4fe *man/getInclusionList.Rd
d28b563a46cb4b23d6982f0ac98a8722 *man/getallpeaks.Rd
3b370884693c2eaf349fc434f94991ca *man/getfeaturestable.Rd
39c0d37978dae61be48b1a4db8e77332 *man/groupmsbatch.Rd
70d844d80be3cd528e7af2d8dfa3d79f *man/hfadb.Rd
1beeb37ddb99a0e3c27c729b3b72f8fb *man/idAcylCerneg.Rd
f16fc84c5a323f96b595d7d17c92b247 *man/idAcylCerpos.Rd
b3dc47b4dc10dec0e68a4077cf662cbf *man/idBAneg.Rd
7c715062d39ff1a4950780cfe94791d2 *man/idCEpos.Rd
a1f478228501994377044a98eafcf29f *man/idCLneg.Rd
77343528bc4d21e50d30882d2964ef54 *man/idCarpos.Rd
fc261f04921320024b3efa60ab5c6d79 *man/idCerPneg.Rd
efd55b5d9934e98eaf4ac82469bc5c3a *man/idCerPpos.Rd
aff7867b86e15e5260fa1aee53030dbc *man/idCerneg.Rd
66785125907dfe21448ef23f083957f0 *man/idCerpos.Rd
5e23f546f2bc9ee07c293fe93b8f765c *man/idDGpos.Rd
ed7c48806076a57e361f63c616af744a *man/idFAHFAneg.Rd
3daa75198b7c02fcaf978d4efcbede65 *man/idFAneg.Rd
7347e33dbd77bb0e1b9365b4fbf84c6a *man/idLPCneg.Rd
fd7ed82f44e555acee30480f89992d5a *man/idLPCpos.Rd
440eb3244a84b1bf4d94a624695ed731 *man/idLPEneg.Rd
c9a29146153940afcca2e8a73da75856 *man/idLPEpos.Rd
b24ab2348a6b210d7babc821c783a630 *man/idLPGneg.Rd
5f2eb650afbc3d8a72d74c29f6124286 *man/idLPIneg.Rd
33fd2581ce6eb172fbb8747343763917 *man/idLPSneg.Rd
114f0bb1c46947e340c0441835069f23 *man/idMGpos.Rd
b26adfa6971458361a073341b534c377 *man/idNEG.Rd
33662bb8817d5bff1f8c3b6680a51a10 *man/idPCneg.Rd
b0beba2d8a6a8b7bdbe7f5974c83d2ed *man/idPConeg.Rd
9e6a75f4843bf6eb8652f0caa99f6156 *man/idPCopos.Rd
e79561d2c9ef5751ed5ed143e801cf5f *man/idPCpneg.Rd
41392071c5dd173f45817c349570a241 *man/idPCpos.Rd
e88caea81acc011328ae99d7d7b0a910 *man/idPCppos.Rd
f48250a33734e601489c3dd2fbc46c94 *man/idPEneg.Rd
5b80fc2cd843aebfd48a809f3a01b9f4 *man/idPEoneg.Rd
b8a878b870209a59fd04a3b05bc4992b *man/idPEopos.Rd
2de8e753c8f97e4ad044bcf0918a56d0 *man/idPEpneg.Rd
bfb085c9e0c7ced7aa29933be412965e *man/idPEpos.Rd
4cbd98ff7e65113dbe439d34ebc4a1b4 *man/idPEppos.Rd
e4b0996393ab14fdedeb229c65d57bfb *man/idPGneg.Rd
d47b3f96f29ee175df29b3b47432d2a4 *man/idPGpos.Rd
8f5feb4cc6d023c21d7970046c3c217d *man/idPIneg.Rd
76caef51d033f67a76f59ed671ccc510 *man/idPIpos.Rd
5cbd98505cb31a9d2b29eb37a8f2782b *man/idPOS.Rd
98fb99395ac28d1fb9e462db0df15776 *man/idPSneg.Rd
f1e118d8ef1877e3fea6b271ce9f2abf *man/idSMneg.Rd
2f812e0bcebe89002bd88ca6a637f52e *man/idSMpos.Rd
f65169a935106357d051b201392423f5 *man/idSphPneg.Rd
1f0625ec18d95b427ab89da33b5fce1b *man/idSphPpos.Rd
a5848f1cfeaa262121070d0e7cf50f83 *man/idSphneg.Rd
30d923c838fe773e6ad96eeb2927a0bb *man/idSphpos.Rd
2d0c8b72bee39c48ee74f70152711473 *man/idTGpos.Rd
2c8ef3cbb6749f8a92aa2ecf9b55dc93 *man/indexrtpart.Rd
bfa23e09e6087d74340631a61161a503 *man/joinAnnotationResults.Rd
ba12a67669c13889930c60442102cba6 *man/joinfrags.Rd
e9d2484fc053abfcefa342c26daba50a *man/lysopadb.Rd
8ee2451980aaffb9910179babcd312d3 *man/lysopaodb.Rd
694f895422f9f0a93e6ccf72119ab17a *man/lysopcdb.Rd
676e849f8ffaf7a3bd8398144680af05 *man/lysopcodb.Rd
0b45030917dd5ebb132be9663f67b128 *man/lysopcpdb.Rd
cea7d15277dcc5cd4163bfb3646ed9b5 *man/lysopedb.Rd
7a2014c202e4544a7ec6139d322208c1 *man/lysopeodb.Rd
8e7625a0bbbb35d0e9a503f880ebd820 *man/lysopepdb.Rd
4f023cf01f281e2b8a15268020429dbf *man/lysopgdb.Rd
7510f749281b8f4d85974f637fedef01 *man/lysopidb.Rd
2e1f1c1bd3ef61d75ad32ddfd4c9de1b *man/lysopsdb.Rd
1b481a9563d05fe6ad51baa603a7f256 *man/mgdb.Rd
34bde2b37fd2a37b75ba8f9d239b6690 *man/mzMatch.Rd
8294f24d538fa80ca97cdb5322bf243b *man/nlsphdb.Rd
8ebd7c1a1a3fdde3547eacb1e9aaada4 *man/organizeResults.Rd
85ee63fea612445d04a50a86f0eb71dc *man/padb.Rd
d8cf82ea08ec680ce478865e791834b1 *man/partitioning.Rd
06be77b2128ca22c48f8009058649d19 *man/pcdb.Rd
618104968e5384c3ff6e64a058696346 *man/pcodb.Rd
3ba44e782a8e9cff9e487a95131f55db *man/pcpdb.Rd
fd9b9e9fe390eaade964681283b13dbe *man/peakdetection.Rd
d68ed36aee40cbc2da2d24211c00e753 *man/pedb.Rd
10c140b671686f41baa216d538fa2c7c *man/peodb.Rd
ec74213fd87efed81341b5a41095d056 *man/pepdb.Rd
d48a5362a7903ac9dcf74318947cf22b *man/pgdb.Rd
27e5ff3c2d00008463da4a6915d673b3 *man/pidb.Rd
70def41645548430ff9085062f240029 *man/plotLipids.Rd
fb49204a453554df6ff97d93ca5d0ce9 *man/ploteicmsbatch.Rd
9a46e94a9287390ba8502127a6effd64 *man/plotticmsbatch.Rd
a35c1592f49f8ef6c544b082d794cdd4 *man/psdb.Rd
96dca88feb5992dd1493eb594c4711a1 *man/readMSfile.Rd
47fd909ca263975834b1612b2917630c *man/rtcorrection.Rd
92e60f7272cdaacf30a06edba28b0c14 *man/rtdevplot.Rd
b20bf467771069b08153c6ce4724bc58 *man/searchIsotopes.Rd
4d281a9e3a8276a968393e3ba86eb8fc *man/searchIsotopesmsbatch.Rd
71fba40ce526fc49aff2dfb6776917e3 *man/select.Rd
196b9fd389eb4754678f69b794bdab42 *man/setmsbatch.Rd
1d6063fe720d981b91fe8de70cbb107f *man/smdb.Rd
1b22497e3749cfd63df21f610d5319a7 *man/sphPdb.Rd
f9bfe6e21807552ef4f4562bf2e8d2a8 *man/sphdb.Rd
adb5d5e32ea3a709c6cf11619808424e *man/sumChains.Rd
d1aa2c343107df77f830169f8d1de6d8 *man/tgdb.Rd
f2fbe7cb72812f9d58df74f8483450b5 *src/Peakpicking.cpp
b76426f5d0122c1ffd09fc4239d01a20 *src/auxPeakPicking.h
032d9a87bb9a989506e51907ae1b1b5b *src/clustdist.cpp
11fc9d76c9c66acbaa3051a653c718b3 *src/init.c
2d3b2b4e0b3ae1a25dcddd178d18433f *vignettes/abstract2.png
1fa5b4a2811d97cb8ea1909f970d94b1 *vignettes/vignette.Rmd
fc25de45ff9acba110e61db4d9b47467 *vignettes/workflow.png
