fec72e586398468aba8da648f8e12dca *DESCRIPTION
620dec5abe35747430a215d8d65731bb *NAMESPACE
3f730ab29544fc1d63946a50242f3a42 *R/DEploidR.R
7efdf7afe8931c93c9c3cdf32a85fb6b *R/RcppExports.R
856a9b3317faac53312a512e049ca0f9 *R/dEploid.R
d3fac2cb88aea885efd78a57cd3b8a06 *R/dEploidPlotly.R
86e0f5d855f8f024f1be4513711c735d *README.md
3d5ac8ca720160834e8b1aeedfa70f91 *build/vignette.rds
461e2dc267742100128d50cd74e757e2 *inst/CITATION
01c90976b229646ca9b46399709688e3 *inst/doc/dEploid-Arguments.R
2cbf6a6a60e07984981e6a2329578f8e *inst/doc/dEploid-Arguments.Rmd
d6797ad241914e1252d49a61bc737b9f *inst/doc/dEploid-Arguments.html
2cad08193815864d8a26f8ac768ef199 *inst/extdata/PG0390-C.test.alt
07eccfaeb952de9e0460bcc12d457b22 *inst/extdata/PG0390-C.test.ref
cdc601c1d8d4eec2bc80512eb8ee6b6b *inst/extdata/PG0390-C.test.vcf.gz
a18778772a21e2614f37800bf1e3d22c *inst/extdata/deploid.png
d5122a085c423ba8bdeff856b6a6f768 *inst/extdata/labStrains.test.PLAF.txt
a865c12e4c27f049106f134b695a0b82 *inst/extdata/labStrains.test.exclude.txt
58b29caf285f90a0900f2b04443ec465 *inst/extdata/labStrains.test.panel.txt
76a896123fd1166011d6ae5ddbfb5930 *man/DEploid-package.Rd
281d55ad310144f7d9779d4ba9a4b597 *man/computeObsWSAF.Rd
a7dec0cf819f7b734569760e93f0a0df *man/dEploid.Rd
d5231f506efc96d0257c95faf60f4c1a *man/extractCoverageFromTxt.Rd
54c88b77f9b79b1402d0d5b932416e90 *man/extractCoverageFromVcf.Rd
3b94e99a025a308b8e6df581b33125b6 *man/extractPLAF.Rd
1d929973d73c6742bd223e1ffc07b15c *man/haplotypePainter.Rd
d27b68362961277a9dae5718e025b2ee *man/histWSAF.Rd
c15c6c7d70701d6d454e46553ec8f3fb *man/plotAltVsRef.Rd
4a719f9ddd20b1604d7ac33f64c9c251 *man/plotAltVsRefPlotly.Rd
2e3ce3260c47e734c3d0aa28cd153abf *man/plotHistWSAFPlotly.Rd
aa2e2c6ae4087fd61777c9fa17742152 *man/plotObsExpWSAF.Rd
ab1b443b0af8bf81d85e063f3556e80f *man/plotObsExpWSAFPlotly.Rd
8f91e514e27c39a978351e2a9976ddc6 *man/plotProportions.Rd
499310d8b94430a9ff1172326bf9f3d5 *man/plotWSAFVsPLAFPlotly.Rd
57351dea18413509031f78bd2b106dae *man/plotWSAFvsPLAF.Rd
c3adb6d6823db1b19840143fa58ba349 *src/DEploid/codeCogs/asympt_expn.h
9c4cc52f7742819084a453fef38e0288 *src/DEploid/codeCogs/errorfn.h
09168cd629e28c9591a8b7a276acc1e4 *src/DEploid/codeCogs/errorfnc.h
23d6452106b5561002ce0c10f3804ef4 *src/DEploid/codeCogs/errorfnc_exp.h
dd8dd57dee7f3c8d2b45dbf03e8c5163 *src/DEploid/codeCogs/expx2.h
2f905303a07a8e69bbd46a3eedbf34eb *src/DEploid/codeCogs/gamma.h
5a369c47236d061678c4e2ea954a0866 *src/DEploid/codeCogs/ln_add1.h
820a1ecd84ab39df9204e9b1e59b8873 *src/DEploid/codeCogs/log_gamma.h
830e4770c3ef6b5afbd962bc89786b34 *src/DEploid/codeCogs/logbeta.h
4d3024ecd41e77f173a95d7ff2bc55ee *src/DEploid/codeCogs/loggammafrac.h
89734db2e095786f0fd83d721b0ee208 *src/DEploid/codeCogs/loggammasum.h
ae7e51c1268072067ffb113c577f5bb6 *src/DEploid/codeCogs/machine_epsilon.h
ccec2bc4b1d1436416711e52b16ef3e0 *src/DEploid/codeCogs/mersenne.hpp
2f8d156a5ffa6d1f3bb302af68b59090 *src/DEploid/codeCogs/poly_eval.h
3ba8122e26b392c415edec3c7b3ac888 *src/DEploid/codeCogs/randomSample.hpp
94c33b48dee38eb7bdc87638e718e09e *src/DEploid/codeCogs/stirling.h
a3585d8d0b267c7076cc835be837bf5f *src/DEploid/codeCogs/xsub_ln_add1.h
b822188831563922209c5cc0d82499d6 *src/DEploid/dEploidIO.cpp
71263fc8d2ef0b0c38e6ddaf0d340b34 *src/DEploid/dEploidIO.hpp
47c3ccc7c67427b403bf67412c19825c *src/DEploid/debug/mcmcDebug.cpp
f2bc5a44cdf66b26c3657897be89c337 *src/DEploid/debug/vcfReaderDebug.cpp
2ab6797644a0dd90391e0dfa38ac9a33 *src/DEploid/exceptions.hpp
aa0d0dbab21a8daecaf3a90cc3986f65 *src/DEploid/export/dEploidIOExport.cpp
391762551ff34224643d84913249c130 *src/DEploid/export/dEploidIOExportPosteriorProb.cpp
b5bcf7475c1cf98f2869687315ddadc2 *src/DEploid/export/io_unit_tests-dEploidIOExport.gcno
cd41749bd41fbd8943bac25991b1bfe7 *src/DEploid/export/io_unit_tests-dEploidIOExportPosteriorProb.gcno
d48ec7b9987fc876518702a03e2ca5a4 *src/DEploid/export/io_unit_tests-writeMcmcRelated.gcno
75c6fda023ea47e11edfab9ff8fa17d6 *src/DEploid/export/unit_tests-dEploidIOExport.gcno
24c88fd4614807d076b5859f83db4492 *src/DEploid/export/unit_tests-dEploidIOExportPosteriorProb.gcno
ca3afe8adac77f56a466072644ce9ae7 *src/DEploid/export/unit_tests-writeMcmcRelated.gcno
8511cebf54bf4ab7ca4b0835b8a06104 *src/DEploid/export/writeMcmcRelated.cpp
0014dc9c1f11529ce9aff9e4d87b9b9d *src/DEploid/global.hpp
7fbc338309ac38fefcd64b04bb903e34 *src/DEploid/gzstream/COPYING.LIB
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72767782fc756a7855f92361e949b499 *src/DEploid/gzstream/test_gunzip.C
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667c569a5d455053fccbd853ba195eab *src/DEploid/gzstream/version
bbd0b64c69d158664fc7f806df5b85b2 *src/DEploid/ibd.cpp
0d527d3a676ae668cebc41b55bfd810e *src/DEploid/ibd.hpp
86aac77dc2bca9a6d561ad37926c8893 *src/DEploid/io_unit_tests-dEploidIO.gcno
28924f91afc0becf40b3fcf0e73ada85 *src/DEploid/io_unit_tests-ibd.gcno
9471e9a45d903ea46e6ab69510722abf *src/DEploid/io_unit_tests-mcmc.gcno
5408a50fcdd42dfd8f6d94767f978712 *src/DEploid/io_unit_tests-panel.gcno
e9d66b5d76439d6185304b39da73cf98 *src/DEploid/io_unit_tests-txtReader.gcno
826003fb763d4c11598cd9740e05230f *src/DEploid/io_unit_tests-updateHap.gcno
8b89a1d5fd625d6bdcb54b882a1a516f *src/DEploid/io_unit_tests-utility.gcno
8022d4b16eb4f2ad5636066658ef17a9 *src/DEploid/io_unit_tests-variantIndex.gcno
ac16f52a55a13e30bfcf4b38e4c889bb *src/DEploid/io_unit_tests-vcfReader.gcno
be3900f55cf510e4011fc09aebbd469e *src/DEploid/lasso/dEploidLasso.cpp
70b70d4a42bfa2673e799f8eb6697576 *src/DEploid/lasso/dEploidLasso.hpp
8d7d21d3dbfd7eeda6783eeb172dc00d *src/DEploid/lasso/dbgmacro.hpp
e99ea8cf316f50632b89a6f2b7015edb *src/DEploid/lasso/io_unit_tests-dEploidLasso.gcno
425f6118f94db38993e5a7fb4fa725db *src/DEploid/lasso/io_unit_tests-lasso.gcno
b1243a1e6ca579543c49bc30cfd79dce *src/DEploid/lasso/lasso.cpp
e77974455e21e3fbc36f3d66a1464cc3 *src/DEploid/lasso/lasso.hpp
a60b6085198e7396d5392472e7d8f3ad *src/DEploid/lasso/lassoDBG.cpp
a76f15742ef70d8525030ec8e517bce8 *src/DEploid/lasso/unit_tests-dEploidLasso.gcno
a9754f31c4a7dfad32d1e7a1548e3265 *src/DEploid/lasso/unit_tests-lasso.gcno
196cfe16ca992fb0e11539bed7372329 *src/DEploid/mcmc.cpp
c8a50d58b170f744e3e764446bf2512b *src/DEploid/mcmc.hpp
94a7d14022d6977963a596d991cf49cc *src/DEploid/panel.cpp
738a29be3df64f963520a408ba5ab91a *src/DEploid/panel.hpp
a6765fb4db45924b1d3b2d7ed6d5b0ae *src/DEploid/random/fastfunc.cpp
1a598d9c9df966427a64ef6a74ce56d5 *src/DEploid/random/fastfunc.hpp
a3f5b7445a682e57556fe9318319d43f *src/DEploid/random/io_unit_tests-fastfunc.gcno
53548a4c41915600c212a1a48dec2f65 *src/DEploid/random/io_unit_tests-mersenne_twister.gcno
447a7184257c8087420390316f185ada *src/DEploid/random/io_unit_tests-random_generator.gcno
d7ee5456f67c91bd7da907001965dd72 *src/DEploid/random/mersenne_twister.cpp
5c40c783d72b75abcd7a5264a74d4c1a *src/DEploid/random/mersenne_twister.hpp
9563d50543ff7687795b66906c787a9f *src/DEploid/random/random_generator.cpp
ad21a81bdcb9369d4c7f9b2d54cb37be *src/DEploid/random/random_generator.hpp
1b9ccde3952d33225c6725330a19a64f *src/DEploid/random/unit_tests-fastfunc.gcno
eae9e71db07c7c25665cdbdb70756d13 *src/DEploid/random/unit_tests-mersenne_twister.gcno
b95ff43e60dc54afaeea0b9c1c9d6191 *src/DEploid/random/unit_tests-random_generator.gcno
7e510de097c6a4b82343f8dbaba4cabe *src/DEploid/txtReader.cpp
9e33ed23ec1e99b143de552cb4c47f08 *src/DEploid/txtReader.hpp
a3a90f42da5dc74c354d7a6864cbebbd *src/DEploid/unit_tests-dEploidIO.gcno
e37dd6a1f4c89bf9c18e7374fb01eab3 *src/DEploid/unit_tests-ibd.gcno
3440d5ce9043a60fd79d7f712f455fac *src/DEploid/unit_tests-mcmc.gcno
796723a200a476f32007aa1bd2945fa7 *src/DEploid/unit_tests-panel.gcno
91efca3bed9b797a4543eb103981c58a *src/DEploid/unit_tests-txtReader.gcno
068a31c93f61b44fa233ad44aa2d56c2 *src/DEploid/unit_tests-updateHap.gcno
1e1c38b5b94f4358791fd296ed2b5877 *src/DEploid/unit_tests-utility.gcno
31acc0f7bcb958114c7be918d18946eb *src/DEploid/unit_tests-variantIndex.gcno
87cb938163001c61953f83de2df05210 *src/DEploid/unit_tests-vcfReader.gcno
8fa54dd0674c17dd90c0f99607b3640f *src/DEploid/updateHap.cpp
3c04f03a2e9e8c022ff6138ce0f5dd67 *src/DEploid/updateHap.hpp
177058e9bd41a4d0905b8cc8b6a9fa50 *src/DEploid/utility.cpp
20acd35532218e8d275c8b1aff30df36 *src/DEploid/utility.hpp
6befb905c2f2db83e6703cf5de751983 *src/DEploid/variantIndex.cpp
1a0ca7691a0ad14a2f03b23511337fc7 *src/DEploid/variantIndex.hpp
87165591ce55df9e0352b0833d5fd14a *src/DEploid/vcfReader.cpp
35b5749b31bae39d02661b505450f46c *src/DEploid/vcfReader.hpp
c4002d59b81406e8bc6fe9eb5535e2c7 *src/Makevars
c4002d59b81406e8bc6fe9eb5535e2c7 *src/Makevars.win
2b97b24c7193853b75825b3fb76daa7e *src/RcppExports.cpp
d8d7321b0ef6566648a7f7c25b3c775c *src/dEploidr.cpp
c5cc16e00e5cd1b8150a274c1fcfd3ad *src/init.c
d9780788cb9e10ae63d0cfb4ce81703d *src/r_random_generator.h
eedb9b59a5a966b63e9e82308caf7349 *src/test_exports.cpp
e095660d571c0f3ef91ce1211ecb7f76 *tests/testthat.R
9d2d8716411d1971ee55a3faca5fad34 *tests/testthat/test-DEploid_tools.R
e6096201933e4b6042e165bca5d80db7 *tests/testthat/test-dEploid.R
f66b335af2d854e56592824fc8df7a0a *tests/testthat/test-r_random-generator.R
2cbf6a6a60e07984981e6a2329578f8e *vignettes/dEploid-Arguments.Rmd
