.eem_csv                Import EEMs from generic csv files.
.trans_parafac          Add data of a PARAFAC model derived from
                        multiway from EEMs
A_missing               Calculate the sample loadings for samples not
                        involved in model building
abs_blcor               Baseline correction for absorbance data
abs_fit_slope           Fit absorbance data to exponential curve. 'drm'
                        is used for the fitting process.
abs_parms               Calculating slopes and slope ratios of a data
                        frame of absorbance data.
absorbance_read         Reading absorbance data from txt and csv files.
as.data.frame.eem       Converting EEM data from class eem to
                        data.frame.
eem2array               Data from an eemlist is transformed into an
                        array
eem_absdil              Multiply absorbance data according to the
                        dilution and remove absorbance from samples
                        where undiluted data is used.
eem_apply               Applying functions on EEMs
eem_checkdata           Check your EEM, absorption and metadata before
                        processing
eem_checksize           Check size of EEMs
eem_corrections         Return names of samples where certain
                        corrections are missing.
eem_csv                 Importer function for generic csv files to be
                        used with eem_read().
eem_csv2                Importer function for generic csv files to be
                        used with eem_read().
eem_dilcorr             Create table how samples should be corrected
                        because of dilution
eem_dilution            Modifying fluorescence data according to
                        dilution.
eem_duplicates          Check for duplicate sample names
eem_easy                Opens an R markdown template for an easy and
                        userfriendly analysis of EEM data.
eem_eemdil              Correct names of EEM samples to match undiluted
                        absorbance data.
eem_exclude             Exclude complete wavelengths or samples form
                        data set
eem_export              Export all samples of an eem_list
eem_extend2largest      EEM sample data is extended to include all
                        wavelengths in all samples
eem_getextreme          Determines the the biggest range of EEM
                        spectrum where data is available from each
                        sample.
eem_hitachi             Importer function for Hitachi F-7000 txt files
                        to be used with eem_read().
eem_ife_correction      Wrapper function to allow
                        eem_inner_filter_effect (eemR) handling
                        different cuvette lengths.
eem_import_dir          Load all eemlist obects saved in different
                        Rdata or RDa files in a folder.
eem_interp              Missing values are interpolated within EEM data
eem_is.na               Check for NAs in EEM data
eem_list                15 fluorescence samples from drEEM used for
                        examples.
eem_list_outliers       2 fluorescence samples from drEEM that were
                        excluded as outliers from the PARAFAC model.
eem_load_dreem          Load original data from the drEEM tutorial and
                        return it as eemlist
eem_matmult             Multiply all EEMs with a matrix
eem_metatemplate        Create table that contains sample names and
                        locations of files.
eem_name_replace        Replace matched patterns in sample names
eem_overview_plot       Plot fluorescence data from several samples
                        split into several plots.
eem_parafac             Runs a PARAFAC analysis on EEM data
eem_raman_area          Calculate raman area of EEM samples
eem_raman_normalisation2
                        Wrapper function to eem_raman_normalisation
                        (eemR).
eem_range               Cut EEM data matching a given wavelength range
eem_read_csv            Import EEMs from generic csv tables
                        (deprecated)
eem_red2smallest        Remove wavelengths, that are missing in at
                        least one sample form the whole set.
eem_rem_scat            Remove Raman and Rayleigh scattering in
                        fluorescence data
eem_scale_ext           Determine the range of fluorescence values in a
                        set of samples
eem_setNA               set parts of specific samples to NA and
                        optionally interpolate these parts
eem_smooth              Smooth fluorescence data by calculating rolling
                        mean along excitation wavelengths.
eem_spectral_cor        Multiply EEMs with spectral correction vectors
                        (Emission and Excitation)
eem_write_csv           Export samples in an EEM list to a single csv
                        files
eempf4analysis          Create table of PARAFAC components and
                        (optionally) EEM peaks and indices as well as
                        absorbance slope parameters.
eempf_OF_upload         Upload PARAFAC models to openfluor.org
eempf_bindxc            Combining extracted components of PARAFAC
                        models
eempf_comp_load_plot    Plot components from a PARAFAC model
eempf_comp_mat          Extract EEM matrix for single components
                        determined in the PARAFAC analysis
eempf_comp_names        Extract names from PARAFAC model components
eempf_comp_names<-      Set names of PARAFAC components
eempf_compare           Plot a set of PARAFAC models to compare the
                        single components
eempf_comps3D           3D plots of PARAFAC components
eempf_convergence       Extract modelling information from a PARAFAC
                        model.
eempf_corcondia         Calculate the core consistancy of an EEM
                        PARAFAC model
eempf_corplot           Plot correlations of components in samples
eempf_cortable          Calculating correlations between the component
                        loadings in all samples (C-Modes).
eempf_eemqual           Calculating EEMqual which is an indicator of a
                        PARAFAC model's quality
eempf_excomp            Extracting components of a PARAFAC model
eempf_export            Create one table containing the PARAFAC models
                        factors and optionally exporting it to csv or
                        txt
eempf_fits              Fits vs. components of PARAFAC models are
                        plotted
eempf_leverage          Calculate the leverage of each emission and
                        excitation wavelength and each sample from a
                        single PARAFAC model
eempf_leverage_data     Combine leverages into one data frame and add
                        optional labels.
eempf_leverage_ident    Plot leverage of emission wavelengths,
                        excitation wavelengths and samples.
eempf_leverage_plot     Plot leverage of emission wavelengths,
                        excitation wavelengths and samples.
eempf_load_plot         Plot amount of each component in each sample as
                        bar plot
eempf_mleverage         Calculate the leverage of each emission and
                        excitation wavelength and each sample from a
                        list of PARAFAC models
eempf_openfluor         Write out PARAFAC components to submit to
                        openfluor.org.
eempf_plot_comps        Plot all components of PARAFAC models
eempf_plot_ssccheck     Plot results from an SSC check
eempf_reorder           Reorder PARAFAC components
eempf_report            Create a html report of a PARAFAC analysis
eempf_rescaleBC         Rescale B and C modes of PARAFAC model
eempf_residuals         Calculate residuals of EEM data according to a
                        certain model
eempf_residuals_metrics
                        Calculate residual metrics from a PARAFAC model
eempf_residuals_plot    Plot samples by means of whole sample, each
                        single component and residuum
eempf_ssc               Calculate the shift-and shape-sensitive
                        congruence (SSC) between model components
eempf_ssccheck          Check SSCs between different models or
                        initialisations of one model
eempf_varimp            Calculate the importance of each component.
geom_eempeakloc         Mark common EEM peaks
geom_eemregions         Mark common reagions to EEMs to show molecular
                        groups
geom_eemscatter         Mark EEM scatter bands
ggeem                   EEM spectra plotted with ggplot2
ggeem_overlay           Add layers of scatter bands, molecular regions
                        and common peaks to EEM plots
list_join               Full join of a list of data frames.
maxlines                Extract data from emission and excitation
                        wavelengths of the components of a PARAFAC
                        model (scaled B- and C-modes)
norm2A                  Compensate for normalisation in C-modes
norm_array              Normalise 3-dimensional array in first and
                        second dimension
parafac_conv            Calculate a PARAFAC model similar to and using
                        'parafac'.
peaks                   data.frame containing common EEM peaks with the
                        wavelengths and possible deviations
pf1                     PARAFAC model, see vignette, unconstrained
pf1n                    PARAFAC model, see vignette, non-negative
                        constraints
pf2                     PARAFAC model, see vignette, non-negative
                        constraints, normalised
pf3                     PARAFAC model, see vignette, non-negative
                        constraints, normalised, outliers removed
pf4                     PARAFAC model, see vignette, non-negative
                        constraints, normalised, outliers removed, high
                        accuarcy
sh                      result from PARAFAC split-half analysis,
                        periodic data split
splithalf               Running a Split-Half analysis on a PARAFAC
                        model
splithalf_plot          Plot results from a splithalf analysis
splithalf_splits        Extracting a list of sample names in each
                        subsample from a splithalf analysis
splithalf_tcc           Extracting TCC values from a splithalf analysis
ssc                     Calculate the shift-and shape-sensitive
                        congruence (SSC) between two matrices
ssc_max                 Calculate the combination of components giving
                        the maximum of geometric mean of TCCs
tcc                     Caluclate Tucker's Congruence Coefficient of
                        PARAFAC components
tcc_find_pairs          Reorders components of different PARAFAC models
                        according to best fit (TCC)
