# Expression Data Analysis and Visualization

## Documentation for package ‘tinyarray’ version 3.0.0

- DESCRIPTION file
- Package README

## Help Pages

auto_geo_group | auto_geo_group
box_surv | box_surv
cod | cod
cor.full | cor.test for all variables
cor.one | cor.test for one variable with all variables
corheatmap | corheatmap
corscatterplot | corscatterplot
deg | deg
deseq_data | deseq_data
double_enrich | draw enrichment bar plots for both up and down genes
draw_boxplot | draw boxplot for expression
draw_heatmap | draw a heatmap plot
draw_heatmap2 | draw heatmap plots
draw_KM | draw_KM
draw_pca | draw PCA plots
draw_tsne | draw_tsne
draw_venn | draw a venn plot
draw_volcano | draw a volcano plot
draw_volcano2 | draw_volcano2
dumd | count unique values in every columns for data.frame
edges_to_nodes | edges_to_nodes
exists_anno_list | exists_anno_list
exprSet_hub1 | exprSet_hub1
exp_boxplot | exp_boxplot
exp_hub1 | exp_hub1
exp_surv | exp_surv
find_anno | Find an annotation table for a GEO platform accession.
genes | genes
geo_download | geo_download
geo_parser | geo_parser
get_cgs | get_cgs
get_count_txt | get count from GEO
get_deg | get_deg
get_deg_all | get_deg_all
get_gpl_txt | get gpl txt from GEO
get_ids | Get probe-to-symbol ids for a GEO platform accession.
ggheat | ggheat
hypertest | hypertest
interaction_to_edges | interaction_to_edges
intersect_all | intersect_all
lnc_anno | lnc_anno
make_tcga_group | make_tcga_group
match_exp_cl | match_exp_cl
meta1 | meta1
mRNA_anno | mRNA_anno
multi_deg | multi_deg
multi_deg_all | multi_deg_all
pkg_all | pkg_all
plcortest | plcortest
plot_deg | plot_deg
point_cut | point_cut
print.geo_auto_group | Print a GEO auto-group result
quick_enrich | quick_enrich
risk_plot | risk_plot
sam_filter | sam_filter
surv_cox | surv_cox
surv_KM | surv_KM
trans_array | trans_array
trans_ensembl_exp | trans_ensembl_exp
trans_entrezexp | trans_entrezexp
trans_entrez_exp | trans_entrezexp
trans_exp | trans_exp
trans_exp_new | trans_exp_new
t_choose | t_choose
union_all | union_all