# Generated by roxygen2: do not edit by hand

export(allele_freq_poly)
export(calculate_Het)
export(calculate_MAF)
export(check_homozygous_trios)
export(check_ped)
export(check_replicates)
export(dosage2vcf)
export(dosage_ratios)
export(filterMADC)
export(filterVCF)
export(flip_dosage)
export(get_countsMADC)
export(imputation_concordance)
export(madc2gmat)
export(madc2vcf_all)
export(madc2vcf_targets)
export(merge_MADCs)
export(solve_composition_poly)
export(thinSNP)
export(updog2vcf)
import(dplyr)
import(janitor)
import(parallel)
import(quadprog)
import(rlang)
import(stringr)
import(tibble)
import(tidyr)
import(vcfR)
importFrom(Biostrings,DNAString)
importFrom(Biostrings,reverseComplement)
importFrom(Rdpack,reprompt)
importFrom(Rsamtools,bgzip)
importFrom(pwalign,nucleotideSubstitutionMatrix)
importFrom(pwalign,pairwiseAlignment)
importFrom(readr,read_csv)
importFrom(reshape2,dcast)
importFrom(reshape2,melt)
importFrom(stats,cor)
importFrom(stats,setNames)
importFrom(utils,packageVersion)
importFrom(utils,read.csv)
importFrom(utils,read.table)
importFrom(utils,tail)
importFrom(utils,write.csv)
importFrom(utils,write.table)
importFrom(vcfR,extract.gt)
importFrom(vcfR,maf)
importFrom(vcfR,read.vcfR)
importFrom(vcfR,write.vcf)
